About: contig N50   Goto Sponge  NotDistinct  Permalink

An Entity of Type : owl:Class, within Data Space : covidontheweb.inria.fr associated with source document(s)

AttributesValues
type
label
  • contig N50
subClassOf
described by
term editor
  • Philippe Rocca-Serra
  • Alejandra Gonzalez-Beltran
example of usage
  • Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18. PMID: 23587118. "Here, the contig and scaffold N50 of the YH genome were ~20.9 kbp and ~22 Mbp"
definition
  • N50 statistic computed for the contigs produced by the assembly process. A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list.
  • N50 statistic computed for the contigs produced by the assembly process. A contig N50 is calculated by first ordering every contig by length from longest to shortest. Next, starting from the longest contig, the lengths of each contig are summed, until this running sum equals one-half of the total length of all contigs in the assembly. The contig N50 of the assembly is the length of the shortest contig in this list.
definition source
  • adapted from: nature:http://www.nature.com/nrg/journal/v13/n5/box/nrg3174_BX1.html
editor preferred term
  • contig N50
has curation status
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