About: Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host’s Transcriptome: The Tobacco Etch Potyvirus

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host’s Transcriptome: The Tobacco Etch Potyvirus—Tobacco Case Study Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host’s Transcriptome: The Tobacco Etch Potyvirus—Tobacco Case Study
Creator	Rodrigo, Guillermo Elena, Santiago Bernet, Guillermo Ambr, Silvia Ector Cervera, H
Source	PMC
abstract	Determining the fitness of viral genotypes has become a standard practice in virology as it is essential to evaluate their evolutionary potential. Darwinian fitness, defined as the advantage of a given genotype with respect to a reference one, is a complex property that captures, in a single figure, differences in performance at every stage of viral infection. To what extent does viral fitness result from specific molecular interactions with host factors and regulatory networks during infection? Can we identify host genes in functional classes whose expression depends on viral fitness? Here, we compared the transcriptomes of tobacco plants infected with seven genotypes of tobacco etch potyvirus that differ in fitness. We found that the larger the fitness differences among genotypes, the more dissimilar the transcriptomic profiles are. Consistently, two different mutations, one in the viral RNA polymerase and another in the viral suppressor of RNA silencing, resulted in significantly similar gene expression profiles. Moreover, we identified host genes whose expression showed a significant correlation, positive or negative, with the virus' fitness. Differentially expressed genes which were positively correlated with viral fitness activate hormone- and RNA silencing-mediated pathways of plant defense. In contrast, those that were negatively correlated with fitness affect metabolism, reducing growth, and development. Overall, these results reveal the high information content of viral fitness and suggest its potential use to predict differences in genomic profiles of infected hosts.
has issue date	2018-03-19(xsd:dateTime)
bibo:doi	10.1093/molbev/msy038
bibo:pmid	29562354
has license	cc-by-nc
sha1sum (hex)	f6e907e13f516564479fe71e2904d14cad572f15
schema:url	https://doi.org/10.1093/molbev/msy038
resource representing a document's title	Viral Fitness Correlates with the Magnitude and Direction of the Perturbation Induced in the Host’s Transcriptome: The Tobacco Etch Potyvirus—Tobacco Case Study
has PubMed Central identifier	PMC5995217
has PubMed identifier	29562354
schema:publication	Mol Biol Evol
resource representing a document's body	covid:f6e907e13f516564479fe71e2904d14cad572f15#body_text
is schema:about of	named entity 'factors' named entity 'extent' named entity 'functional' named entity 'genes' named entity 'correlated' named entity 'transcriptomic' named entity 'metabolism' named entity 'depends' named entity 'fitness' named entity 'Direction' covid:arg/f6e907e13f516564479fe71e2904d14cad572f15 named entity 'evaluate' named entity 'potential' named entity 'host' named entity 'regulatory networks' named entity 'fitness' named entity 'gene' named entity 'host' named entity 'hosts' named entity 'reducing' named entity 'reference' named entity 'Fern' named entity 'mitotic' named entity 'gene' named entity 'metabolites' named entity 'diethyl pyrocarbonate' named entity 'methylation' named entity 'genomes' named entity 'gene ontology' named entity 'ATP' named entity 'virus' named entity 'gene ontology' named entity 'CRF1' named entity 'virus' named entity 'UPGMA' named entity 'virus' named entity 'ascorbate' named entity 'homeostasis' named entity 'gene ontology' named entity 'Student's t-test' named entity 'systems biology' named entity 'gene ontology' named entity 'bZIP' named entity 'distribution of fitness effects' named entity 'nitrogen' named entity 'adenosine kinase' named entity 'gene' named entity 'transcriptional regulation' named entity 'Applied Biosystems' named entity 'gene ontology' named entity 'RNA transcripts' named entity 'virus' named entity 'DNA methylation' named entity 'metabolism' named entity 'correlation coefficient' named entity 'point mutations' named entity 'genotypes' named entity 'RT-qPCR' named entity 'RNA-directed DNA methylation' named entity 'photosynthesis' named entity 'RNAs' named entity 'Agilent' named entity 'nucleosome assembly' named entity 'NBR1' named entity 'RNA' named entity 'ATPase' named entity 'genotypes' named entity 'BglII' named entity 'turnip' named entity 'genotypes' named entity 'organism' named entity 'gene transcription' named entity 'FDR' named entity 'FDR' named entity 'organism' named entity 'genotypes' named entity 'NCBI'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software