About: ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes

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About: ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes
Creator	Zhang, Chun-Ting Zhang, Ren Chen, Ling-Ling Ou, Hong-Yu
Source	Elsevier; Medline; PMC
abstract	Abstract A new system to recognize protein coding genes in the coronavirus genomes, specially suitable for the SARS-CoV genomes, has been proposed in this paper. Compared with some existing systems, the new program package has the merits of simplicity, high accuracy, reliability, and quickness. The system ZCURVE_CoV has been run for each of the 11 newly sequenced SARS-CoV genomes. Consequently, six genomes not annotated previously have been annotated, and some problems of previous annotations in the remaining five genomes have been pointed out and discussed. In addition to the polyprotein chain ORFs 1a and 1b and the four genes coding for the major structural proteins, spike (S), small envelop (E), membrane (M), and nuleocaspid (N), respectively, ZCURVE_CoV also predicts 5–6 putative proteins in length between 39 and 274 amino acids with unknown functions. Some single nucleotide mutations within these putative coding sequences have been detected and their biological implications are discussed. A web service is provided, by which a user can obtain the annotated result immediately by pasting the SARS-CoV genome sequences into the input window on the web site (http://tubic.tju.edu.cn/sars/). The software ZCURVE_CoV can also be downloaded freely from the web address mentioned above and run in computers under the platforms of Windows or Linux.
has issue date	2003-07-25(xsd:dateTime)
bibo:doi	10.1016/s0006-291x(03)01192-6
bibo:pmid	12859968
has license	els-covid
sha1sum (hex)	e0363b94f19c3295ca9ef3044a23d264b7373069
schema:url	https://doi.org/10.1016/s0006-291x%2803%2901192-6
resource representing a document's title	ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes
has PubMed Central identifier	PMC7134609
has PubMed identifier	12859968
schema:publication	Biochemical and Biophysical Research Communications
resource representing a document's body	covid:e0363b94f19c3295ca9ef3044a23d264b7373069#body_text
is schema:about of	named entity 'SARS-COV' named entity 'CODING' named entity 'SARS-CoV' named entity 'recognize' named entity 'The' named entity 'CODING' named entity 'SYSTEM' named entity '5-6' named entity 'HAVE' named entity 'HIGH' named entity 'LENGTH' named entity 'INPUT' named entity 'NUCLEOTIDE' named entity 'ADDITION' named entity 'USER' named entity 'COMPARED' named entity 'COMPUTERS' named entity 'NEWLY' named entity 'AMINO ACIDS' named entity 'ORFS' named entity 'WEB' named entity 'FUNCTIONS' named entity 'NEW' named entity 'RELIABILITY' named entity 'DETECTED' named entity 'FREELY' named entity '28S' named entity 'PROBLEMS' named entity 'SMALL' named entity 'ACCURACY' named entity 'RECOGNIZE' named entity 'SYSTEM' named entity 'ITS' named entity 'GENES' named entity 'WEB SITE' named entity 'RESULT' named entity 'RECOGNIZE' named entity 'PROVIDED' named entity 'ANALYZING' named entity 'GENOMES' named entity 'GENES' named entity 'APPLICATIONS' named entity 'PREVIOUS' named entity 'PROPOSED' named entity 'PROTEIN ' named entity 'GENOMES' named entity 'ADDRESS' named entity 'PAPER' named entity 'THEIR' named entity 'UNKNOWN' named entity 'OBTAIN' named entity 'THESE' named entity 'WINDOWS' named entity 'SARS-COV' named entity 'PROTEINS' named entity 'SEQUENCES' named entity 'PROGRAM PACKAGE' named entity 'BIOLOGICAL' named entity 'SYSTEMS' named entity 'SUITABLE' named entity 'CHAIN' named entity 'POLYPROTEIN' named entity 'IMMEDIATELY' named entity 'CORONAVIRUS' named entity 'SINGLE' named entity 'SOFTWARE' named entity 'LINUX' named entity 'POINTED' named entity 'MAJOR' named entity 'ANNOTATED' named entity 'SPIKE' named entity 'REMAINING' named entity 'RUN' named entity 'PREVIOUSLY' named entity 'WINDOW' named entity 'NEW' named entity 'CORONAVIRUS' named entity 'ANNOTATIONS'

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