About: Human coronavirus circulation in the United States 2014

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About: Human coronavirus circulation in the United States 2014–2017() Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

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type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Human coronavirus circulation in the United States 2014–2017()
Creator	Haynes, Amber Mustaquim, Desiree Watson, John Biggs, Holly Dahl, Rebecca Killerby, Marie Gerber, Susan
Source	Elsevier; Medline; PMC
abstract	BACKGROUND: Human coronaviruses (HCoVs) -OC43, -229E, -NL63 and -HKU1 cause upper and lower respiratory tract infections. HCoVs are globally distributed and the predominant species may vary by region or year. Prior studies have shown seasonal patterns of HCoV species and annual variation in species prevalence but national circulation patterns in the US have not yet been described. OBJECTIVES: To describe circulation patterns of HCoVs -OC43, -229E, -NL63 and -HKU1 in the US. STUDY DESIGN: We reviewed real-time reverse transcription polymerase chain reaction (rRT-PCR) test results for HCoV-OC43, -229E, -NL63 and -HKU1 reported to The National Respiratory and Enteric Virus Surveillance System (NREVSS) by U.S. laboratories from July 2014–June 2017. We calculated the total number of tests and percent positive by week. For a subset of HCoV positive submissions with age and sex of the patient available, we tested for differences in age and sex across the four HCoV species using Chi Square and Kruskal Wallace tests. RESULTS: 117 laboratories reported 854,575 HCoV tests; 2.2% were positive for HCoV-OC43, 1.0% for HCoV-NL63, 0.8% for HCoV-229E, and 0.6% for HCoV-HKU1. The percentage of positive tests peaked during December – March each year. No significant differences in sex were seen across species, although a significant difference in age distribution was noted. CONCLUSIONS: Common HCoVs may have annual peaks of circulation in winter months in the US, and individual HCoVs may show variable circulation from year to year. Different HCoV species may be detected more frequently in different age groups. Further years of data are needed to better understand patterns of activity for HCoVs.
has issue date	2018-01-31(xsd:dateTime)
bibo:doi	10.1016/j.jcv.2018.01.019
bibo:pmid	29427907
has license	no-cc
sha1sum (hex)	d426c3dfc0f958f0b70faaed6be773efce5517bc
schema:url	https://doi.org/10.1016/j.jcv.2018.01.019
resource representing a document's title	Human coronavirus circulation in the United States 2014–2017()
has PubMed Central identifier	PMC7106380
has PubMed identifier	29427907
schema:publication	J Clin Virol
resource representing a document's body	covid:d426c3dfc0f958f0b70faaed6be773efce5517bc#body_text
is schema:about of	named entity '2017' named entity 'PATTERNS' named entity 'STUDIES' named entity 'OC43' named entity 'CIRCULATION' named entity 'HAVE' named entity 'DISTRIBUTED' named entity 'BUT' named entity 'CAUSE' named entity '229E' named entity 'YEAR' named entity 'GLOBALLY' named entity 'PREDOMINANT' named entity 'PRIOR' named entity 'UNITED STATES' named entity 'LOWER RESPIRATORY TRACT INFECTIONS' named entity 'TEST RESULTS' named entity 'OBJECTIVES' named entity 'CORONAVIRUSES' named entity 'REVIEWED' named entity 'BACKGROUND' named entity 'PCR' named entity 'NL63' named entity 'NATIONAL' named entity 'CIRCULATION' named entity 'PREVALENCE' named entity 'UPPER' named entity 'STUDY DESIGN' named entity 'TO DESCRIBE' named entity 'HUMAN' named entity 'SEASONAL' named entity 'REAL-TIME REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION' named entity 'HUMAN CORONAVIRUS' named entity 'SPECIES' named entity 'DESCRIBED' named entity 'HCOV-OC43' named entity 'VARIATION' named entity 'REGION' named entity 'ANNUAL' named entity 'real-time' named entity 'prevalence' named entity 'OC43' named entity 'HCoV-OC43' named entity 'HCoV-OC43' named entity 'rRT-PCR' named entity 'Chi Square Test' named entity 'HCoV-229E' named entity 'infection' named entity 'HCoV-HKU1' named entity 'HCoV-HKU1' named entity 'pathogens' named entity '5.7%' named entity 'PHLIP' named entity 'influenza' named entity 'parainfluenza' named entity 'coronaviruses' named entity 'HCoV-NL63' named entity 'HCoV-229E' named entity 'HCoV-OC43' named entity 'laboratory test' named entity 'PHLIP' named entity 'public health laboratories' named entity 'NL63' named entity 'asymptomatic' named entity 'PHLIP' named entity 'HCoV-HKU1' named entity 'human metapneumovirus' named entity 'viruses' named entity 'OC43' named entity 'PHLIP' named entity 'HCoV-OC43' named entity 'pneumonia' named entity 'RSV' named entity 'PHLIP' named entity 'HCoV-OC43'

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