About: Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19

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About: Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19 Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19
Creator	Aguiar, Eric Pacheco, Luis Almeida, João Belitardo, Emilia Campos, Gubio Carvalho, Rejane Falcao, Melissa Menezes, Aline Pinheiro, Carina Rocha, Danilo Rolo, Carolina Sardi, Silvia
source	Elsevier; Medline; PMC
abstract	Herein, we describe the detection of a SARS-CoV-2 genome through metatranscriptome next-generation sequencing directly from the nasopharyngeal swab of a suspected case of local transmission of Covid-19, in Brazil. Depletion of human ribosomal RNA and use of an optimized in-house developed bioinformatics strategy contributed to successful detection of the virus.
has issue date	2020-05-21(xsd:dateTime)
bibo:doi	10.1016/j.jviromet.2020.113888
bibo:pmid	32445875
has license	no-cc
sha1sum (hex)	cb9a1a77b12ae0f62ba193961e49866637772cd7
schema:url	https://doi.org/10.1016/j.jviromet.2020.113888
resource representing a document's title	Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19
has PubMed Central identifier	PMC7240266
has PubMed identifier	32445875
schema:publication	J Virol Methods
resource representing a document's body	covid:cb9a1a77b12ae0f62ba193961e49866637772cd7#body_text
is schema:about of	named entity 'Resources' named entity 'COVID-19' named entity 'Project' named entity 'administration' named entity 'Sardi' named entity 'Writing' named entity 'Methodology' named entity 'Pacheco' named entity 'REVIEW' named entity 'METATRANSCRIPTOMICS' named entity 'equally' named entity 'Writing' named entity 'Ion torrent' named entity 'nasopharyngeal swab' named entity 'ThermoFisher' named entity 'local transmission' named entity 'SARS-CoV-2' named entity 'coronaviruses' named entity 'contigs' named entity 'recombination' named entity 'diagnostic tools' named entity 'metagenomics' named entity 'Italy' named entity 'contigs' named entity 'Promega' named entity 'genome' named entity 'Feira de Santana' named entity 'Viral' named entity 'RNA-Seq' named entity 'number of reads' named entity 'viral infections' named entity 'SARS-CoV-2' named entity 'RT-qPCR' named entity 'ThermoFisher' named entity 'public hospital' named entity 'virus' named entity 'covid-19' named entity 'COVID-19' named entity 'contig' named entity 'SNP analysis' named entity 'Brazil' named entity 'nasopharyngeal swab' named entity 'contigs' named entity 'Eukaryote' named entity 'reference genome' named entity 'contig' named entity 'N50' named entity 'RT-qPCR' named entity 'nasopharyngeal swabs' named entity 'rRNA' named entity 'SARS-Cov-2' named entity 'sars-cov-2' named entity 'RNA' named entity 'RT-qPCR' named entity 'Phred' named entity 'metatranscriptomics' named entity 'COVID' named entity 'COVID' named entity 'contig' named entity 'Sequencing data' named entity 'SARS' named entity 'pathogens' named entity 'metagenome' named entity 'Brazil' named entity '3, 4' named entity 'genome' named entity 'Federal University of Bahia' named entity 'SNP' named entity 'SARS-CoV-2' named entity 'Promega'

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