About: Bacterial and viral pathogen spectra of acute respiratory infections in under-5 children in hospital settings in Dhaka city

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About: Bacterial and viral pathogen spectra of acute respiratory infections in under-5 children in hospital settings in Dhaka city Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Bacterial and viral pathogen spectra of acute respiratory infections in under-5 children in hospital settings in Dhaka city
Creator	Qadri, Firdausi Khanam, Farhana Ahmed, Dilruba Begum, Firoza Begum, Noorjahan Mannoor, Kaiissar Matin, Abdul Mowla, Golam Rahat, Asifuzzaman Saha, Narayan Shirin, Tahmina Sultana, Nusrat Hossain, Mohammad Bhuyan, Golam, Sarower Haque, Tanjina Hossain, Manjur Islam, Mohammad Islam, Nafisa Islam, Tarikul Jony, Khan Kumar Sarker, Suprovath Muraduzzaman, A Qadri, Syeda
source	Medline; PMC
abstract	The study aimed to examine for the first time the spectra of viral and bacterial pathogens along with the antibiotic susceptibility of the isolated bacteria in under-5 children with acute respiratory infections (ARIs) in hospital settings of Dhaka, Bangladesh. Nasal swabs were collected from 200 under-five children hospitalized with clinical signs of ARIs. Nasal swabs from 30 asymptomatic children were also collected. Screening of viral pathogens targeted ten respiratory viruses using RT-qPCR. Bacterial pathogens were identified by bacteriological culture methods and antimicrobial susceptibility of the isolates was determined following CLSI guidelines. About 82.5% (n = 165) of specimens were positive for pathogens. Of 165 infected cases, 3% (n = 6) had only single bacterial pathogens, whereas 43.5% (n = 87) cases had only single viral pathogens. The remaining 36% (n = 72) cases had coinfections. In symptomatic cases, human rhinovirus was detected as the predominant virus (31.5%), followed by RSV (31%), HMPV (13%), HBoV (11%), HPIV-3 (10.5%), and adenovirus (7%). Streptococcus pneumoniae was the most frequently isolated bacterial pathogen (9%), whereas Klebsiella pneumaniae, Streptococcus spp., Enterobacter agglomerans, and Haemophilus influenzae were 5.5%, 5%, 2%, and 1.5%, respectively. Of 15 multidrug-resistant bacteria, a Klebsiella pneumoniae isolate and an Enterobacter agglomerans isolate exhibited resistance against more than 10 different antibiotics. Both ARI incidence and predominant pathogen detection rates were higher during post-monsoon and winter, peaking in September. Pathogen detection rates and coinfection incidence in less than 1-year group were significantly higher (P = 0.0034 and 0.049, respectively) than in 1–5 years age group. Pathogen detection rate (43%) in asymptomatic cases was significantly lower compared to symptomatic group (P<0.0001). Human rhinovirus, HPIV-3, adenovirus, Streptococcus pneumonia, and Klebsiella pneumaniae had significant involvement in coinfections with P values of 0.0001, 0.009 and 0.0001, 0.0001 and 0.001 respectively. Further investigations are required to better understand the clinical roles of the isolated pathogens and their seasonality.
has issue date	2017-03-27(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0174488
bibo:pmid	28346512
has license	cc-by
sha1sum (hex)	c95aaaeafc4bea827a28f4f300ca76608fecd107
schema:url	https://doi.org/10.1371/journal.pone.0174488
resource representing a document's title	Bacterial and viral pathogen spectra of acute respiratory infections in under-5 children in hospital settings in Dhaka city
has PubMed Central identifier	PMC5367831
has PubMed identifier	28346512
schema:publication	PLoS One
resource representing a document's body	covid:c95aaaeafc4bea827a28f4f300ca76608fecd107#body_text
is schema:about of	named entity 'BACTERIAL' named entity 'ANTIMICROBIAL SUSCEPTIBILITY' named entity 'SINGLE' named entity 'ISOLATED' named entity 'RESPIRATORY VIRUSES' named entity 'HTTPS' named entity 'PATHOGENS' named entity 'NASAL SWABS' named entity 'STREPTOCOCCUS PNEUMONIAE' named entity 'ASYMPTOMATIC' named entity 'BACTERIOLOGICAL' named entity 'HMPV' named entity 'TIME' named entity 'DETECTED' named entity 'CULTURE' named entity '200' named entity 'RSV' named entity 'POST' named entity 'MONSOON' named entity 'ADENOVIRUS' named entity 'HAEMOPHILUS INFLUENZAE' named entity 'IN HOSPITAL' named entity 'MULTIDRUG-RESISTANT BACTERIA' named entity 'GUIDELINES' named entity 'COLLECTED' named entity 'MORE THAN' named entity 'FOLLOWING' named entity 'VIRAL PATHOGENS' named entity 'POSITIVE FOR' named entity 'ARI' named entity 'FREQUENTLY' named entity 'ANTIBIOTICS' named entity 'BACTERIAL PATHOGENS' named entity 'ENTEROBACTER AGGLOMERANS' named entity 'SYMPTOMATIC' named entity 'DETERMINED' named entity 'IDENTIFIED BY' named entity 'KLEBSIELLA PNEUMONIAE' named entity 'TO EXAMINE' named entity 'DIFFERENT' named entity 'PEAKING' named entity 'KLEBSIELLA' named entity 'RESISTANCE' named entity 'DHAKA' named entity 'CHILDREN HOSPITALIZED' named entity 'IN HOSPITAL' named entity 'METHODS' named entity 'SPP' named entity 'BANGLADESH' named entity 'HIGHER' named entity 'BACTERIA ' named entity 'BACTERIAL PATHOGEN' named entity 'TARGETED' named entity 'DHAKA' named entity 'HPIV-3' named entity 'INFECTED' named entity 'VIRUS' named entity '82.5'

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