About: Introductions and early spread of SARS-CoV-2 in the New York City area

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About: Introductions and early spread of SARS-CoV-2 in the New York City area Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Introductions and early spread of SARS-CoV-2 in the New York City area
Creator	Krammer, Florian Paniz-Mondolfi, Alberto Simon, Viviana Kasarskis, Andrew Patel, Gopi Alburquerque, Bremy Gonzalez-Reiche, Ana Van Bakel, Harm Aberg, Judith Altman, Deena Gitman, Melissa Hernandez, Matthew Sordillo, Emilia Affiliations, ☨ Alshammary, Hala Ciferri, Brianne Deikus, Gintaras Dutta, Jayeeta Fabre, Shelcie Francoeur, Nancy García-Sarstre, Adolfo Hara Sridhar, Shwetha Khan, Zenab Kleiner, Giulio Luksza, Marta Melo, Betsaida Obla, Ajay Oussenko, Irina Polanco, Jose Sebra, Robert Smith, Melissa Soto, Juan Sullivan, Mitchell Twyman, Kathryn Van De Guchte, Adriana Wang, Ying-Chih
Source	MedRxiv
abstract	New York City (NYC) has emerged as one of the epicenters of the current SARS-CoV2 pandemic. To identify the early events underlying the rapid spread of the virus in the NYC metropolitan area, we sequenced the virus causing COVID19 in patients seeking care at the Mount Sinai Health System. Phylogenetic analysis of 84 distinct SARS-CoV2 genomes indicates multiple, independent but isolated introductions mainly from Europe and other parts of the United States. Moreover, we find evidence for community transmission of SARS-CoV2 as suggested by clusters of related viruses found in patients living in different neighborhoods of the city.
has issue date	2020-04-11(xsd:dateTime)
bibo:doi	10.1101/2020.04.08.20056929
has license	medrxiv
sha1sum (hex)	c0bb5dc3742afca154effbd129637f221026e5d0
schema:url	https://doi.org/10.1101/2020.04.08.20056929
resource representing a document's title	Introductions and early spread of SARS-CoV-2 in the New York City area
resource representing a document's body	covid:c0bb5dc3742afca154effbd129637f221026e5d0#body_text
is schema:about of	named entity 'multiple' named entity 'COMMUNITY' named entity 'UNITED STATES' named entity 'causing' named entity 'NYC' named entity 'hospitals' named entity 'events' named entity 'NYC' named entity 'New York City' named entity 'SARS-CoV2' named entity 'NYC' named entity 'sequenced' named entity 'Phylogenetic analysis' named entity 'genomes' named entity 'COVID19' named entity 'NYC' named entity 'Mount Sinai Health System' named entity 'NYC' named entity 'China' named entity 'monophyletic' named entity 'Mount Sinai' named entity 'medRxiv' named entity 'SARS-CoV-2' named entity 'SARS-CoV-2' named entity 'COVID' named entity 'A2a' named entity 'nasopharyngeal swabs' named entity 'gene' named entity 'SARS-CoV-2' named entity 'fever' named entity 'NYC' named entity 'SARS-CoV-2' named entity 'plasmid' named entity 'RNA' named entity 'nucleotide substitution' named entity 'Icahn School of Medicine' named entity 'Clinical Microbiology Laboratory' named entity 'SARS-CoV-2' named entity 'Manhattan' named entity 'SARS-CoV-2' named entity 'influenza' named entity 'Maximum likelihood' named entity 'GISAID' named entity 'medRxiv' named entity 'medRxiv' named entity 'influenza' named entity 'influenza virus' named entity '2.0' named entity 'NYC' named entity 'confidence interval'

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