About: Phylogenetic inference from binary sequences reduced by primary DNA sequences

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Phylogenetic inference from binary sequences reduced by primary DNA sequences
Creator	Wang, Jun Zheng, Xiaoqi Wang, J Zheng, X Dou, Yongchao Dou, ·
Source	Medline; PMC
abstract	Given a bi-classification of nucleotides, we can obtain a reduced binary sequence of a primary DNA sequence. This binary sequence will undoubtedly retain some biological information and lose the rest. Here we want to know what kind of and how much biological information an individual binary sequence carries. Three classifications of nucleotides are explored in the present article. Phylogenetic trees are built from these binary sequences by the Neighbor-Joining (NJ) method, with evolutionary distance evaluated on the basis of a symbolic sequence complexity. We find that, for all data sets studied, binary sequences reduced by the purine/pyrimidine classification give reliable phylogeny (almost the same as that from the primary sequences), while the other two result in discrepancies at different levels. Some possible reasons and a simple model of sequence evolutionary are introduced to interpret this phenomenon.
has issue date	2008-12-10(xsd:dateTime)
bibo:doi	10.1007/s10910-008-9504-2
bibo:pmid	32214589
has license	no-cc
sha1sum (hex)	be901bba4d2fb6364b19cb93214199b71c1d9dc7
schema:url	https://doi.org/10.1007/s10910-008-9504-2
resource representing a document's title	Phylogenetic inference from binary sequences reduced by primary DNA sequences
has PubMed Central identifier	PMC7088321
has PubMed identifier	32214589
schema:publication	J Math Chem
resource representing a document's body	covid:be901bba4d2fb6364b19cb93214199b71c1d9dc7#body_text
is schema:about of	named entity 'interpret' named entity 'binary sequences' named entity 'reliable' named entity 'KIND' named entity 'studied' named entity 'individual' named entity 'phenomenon' named entity 'DNA sequence' named entity 'primary' named entity 'binary sequence' named entity 'kind' named entity 'data sets' named entity 'data analysis' named entity 'spike protein' named entity 'torovirus' named entity 'evolutionary biologists' named entity 'nucleotides' named entity 'Rattus norvegicus' named entity 'pyrimidine' named entity 'point mutations' named entity 'DNA sequences' named entity 'placental mammals' named entity 'minimum number' named entity 'DNA sequence' named entity 'mutation rate' named entity 'Didelphis virginiana' named entity 'neighbor-joining method' named entity 'maximum parsimony' named entity 'Capra hircus' named entity 'genomes' named entity 'Eutherian' named entity 'clade' named entity 'Homo sapiens' named entity 'Gorilla gorilla' named entity 'structure prediction' named entity 'mutation rates' named entity 'mutual information' named entity 'phylogenetic' named entity 'Primates' named entity 'biological sequences' named entity 'gray seal' named entity 'fin whale' named entity 'topology' named entity 'purine' named entity 'harbor seal' named entity 'transversions' named entity 'cytoplasm' named entity 'transversion' named entity 'phylogenetic tree' named entity 'Probabilities' named entity 'phylogenies' named entity 'systematists' named entity 'DNA sequences' named entity 'DNA duplication' named entity 'primary sequence' named entity 'eigenvectors' named entity 'H-bonds' named entity 'phylogeny' named entity 'mutation rates' named entity 'mammals' named entity 'compression ratio' named entity 'topology' named entity 'molecular genetics' named entity 'phylogenetic tree' named entity 'additive error term' named entity 'homology' named entity 'UPGMA' named entity 'mutation rates' named entity 'Mus musculus' named entity 'topology' named entity 'evolution' named entity 'random mutation' named entity 'nucleotide' named entity 'sequence evolution' named entity 'entropy' named entity 'chimpanzee'

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