About: Diversity of coronavirus in bats from Eastern Thailand

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About: Diversity of coronavirus in bats from Eastern Thailand Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Diversity of coronavirus in bats from Eastern Thailand
Creator	Daszak, Peter Ghai, Siriporn Hemachudha, Thiravat Kaewpom, Thongchai Rodpan, Apaporn Wacharapluesadee, Supaporn Epstein, Jonathan Chareesaen, Chaiyaporn Duengkae, Prateep Kanchanasaka, Budsabong Khlangsap, Nathawat Leadprathom, Kumron Maneeorn, Patarapol Pidthong, Apisit Sittidetboripat, Nuntaporn Yingsakmongkon, Sangchai Blair, Patrick Olival, Kevin Callahan, Michael
Source	Medline; PMC
abstract	BACKGROUND: Bats are reservoirs for a diverse range of coronaviruses (CoVs), including those closely related to human pathogens such as Severe Acute Respiratory Syndrome (SARS) CoV and Middle East Respiratory Syndrome CoV. There are approximately 139 bat species reported to date in Thailand, of which two are endemic species. Due to the zoonotic potential of CoVs, standardized surveillance efforts to characterize viral diversity in wildlife are imperative. FINDINGS: A total of 626 bats from 19 different bat species were individually sampled from 5 provinces in Eastern Thailand between 2008 and 2013 (84 fecal and 542 rectal swabs). Samples collected (either fresh feces or rectal swabs) were placed directly into RNA stabilization reagent, transported on ice within 24 hours and preserved at −80°C until further analysis. CoV RNA was detected in 47 specimens (7.6%), from 13 different bat species, using broadly reactive consensus PCR primers targeting the RNA-Dependent RNA Polymerase gene designed to detect all CoVs. Thirty seven alphacoronaviruses, nine lineage D betacoronaviruses, and one lineage B betacoronavirus (SARS-CoV related) were identified. Six new bat CoV reservoirs were identified in our study, namely Cynopterus sphinx, Taphozous melanopogon, Hipposideros lekaguli, Rhinolophus shameli, Scotophilus heathii and Megaderma lyra. CONCLUSIONS: CoVs from the same genetic lineage were found in different bat species roosting in similar or different locations. These data suggest that bat CoV lineages are not strictly concordant with their hosts. Our phylogenetic data indicates high diversity and a complex ecology of CoVs in bats sampled from specific areas in eastern regions of Thailand. Further characterization of additional CoV genes may be useful to better describe the CoV divergence.
has issue date	2015-04-11(xsd:dateTime)
bibo:doi	10.1186/s12985-015-0289-1
bibo:pmid	25884446
has license	cc-by
sha1sum (hex)	bc67c021d6e189215a0101f6e5de32daa8e4ccee
schema:url	https://doi.org/10.1186/s12985-015-0289-1
resource representing a document's title	Diversity of coronavirus in bats from Eastern Thailand
has PubMed Central identifier	PMC4416284
has PubMed identifier	25884446
schema:publication	Virol J
resource representing a document's body	covid:bc67c021d6e189215a0101f6e5de32daa8e4ccee#body_text
is schema:about of	named entity 'bats' named entity 'specimens' named entity 'rectal' named entity 'Scotophilus' named entity 'PHYLOGENETIC DATA' named entity 'DUE TO' named entity 'WITHIN 24 HOURS' named entity 'THAILAND' named entity 'BATS' named entity '287' named entity 'POTENTIAL' named entity 'PLACED' named entity 'FECAL' named entity 'REGIONS' named entity 'USING' named entity 'SCOTOPHILUS HEATHII' named entity 'REPORTED' named entity 'APPROXIMATELY' named entity 'NEW' named entity '626' named entity 'OUR' named entity 'THEIR' named entity 'COVS' named entity 'RELATED' named entity 'INCLUDING' named entity 'DATA' named entity '139' named entity 'SEVEN' named entity 'BAT' named entity 'FECES' named entity 'RNA STABILIZATION' named entity 'GENES' named entity 'SEVERE ACUTE RESPIRATORY SYNDROME' named entity 'SAMPLES' named entity 'REAGENT' named entity 'RANGE' named entity 'HIPPOSIDEROS LEKAGULI' named entity 'HOSTS' named entity 'THESE' named entity 'ANALYSIS' named entity 'SWABS' named entity 'STUDY' named entity 'RNA' named entity 'DIFFERENT' named entity 'BETACORONAVIRUS' named entity 'USEFUL' named entity 'DESCRIBE' named entity 'SPECIES' named entity 'DIVERSE' named entity 'VIRAL' named entity 'SURVEILLANCE' named entity 'THIRTY' named entity 'PATHOGENS' named entity 'CHARACTERIZATION' named entity 'PRESERVED' named entity 'GENETIC' named entity 'BATS' named entity 'AREAS' named entity 'CONSENSUS PCR' named entity 'BACKGROUND' named entity 'DIVERSITY' named entity 'LINEAGE' named entity 'CORONAVIRUSES'

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