About: Phylogeny of Viruses

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Phylogeny of Viruses
Creator	Yamada, T Etten, Van Onimatsu, H
Source	Elsevier; PMC
abstract	Biological species, including viruses, change through generations and over time in the process known as evolution. Viruses may evolve at high, uneven, and fluctuating rates among genome sites. The accumulated changes, through either mutation or recombination with other species, are first fixed in the genome of successful individuals that give rise to genetic lineages. The relationship between biological lineages related by common descent is called ‘phylogeny’. For inferring phylogeny, the differences between aligned sequences of genomes and proteins are quantified and depicted in the form of a tree, in which contemporary species and their intermediate and common ancestors occupy, respectively, the terminal nodes, internal nodes, and the root. The tree is characterized by a topology, length of branches, shape, and the root position. A complex mathematical apparatus has been developed for phylogeny inference that can evaluate inter-species differences, facilitate tree building and comparison of trees, and assess the fit between data and tree through, typically, computationally intensive calculations. A reconstructed tree is an approximation of the true phylogeny that practically remains unknown. The phylogenetic analysis is used in applied and fundamental virus research, including epidemiology, diagnostics, forensic studies, phylogeography, evolutionary studies, and virus taxonomy. It can provide an evolutionary perspective on variation of any trait that can be measured for a group of viruses.
has issue date	2008-12-31(xsd:dateTime)
bibo:doi	10.1016/b978-012374410-4.00712-3
has license	els-covid
sha1sum (hex)	9b8b585778de84e7ced9af95e4977ff678970471
schema:url	https://doi.org/10.1016/b978-012374410-4.00712-3
resource representing a document's title	Phylogeny of Viruses
has PubMed Central identifier	PMC7150205
schema:publication	Encyclopedia of Virology
resource representing a document's body	covid:9b8b585778de84e7ced9af95e4977ff678970471#body_text
is schema:about of	named entity 'granted' named entity 'transcription' named entity 'Phylogeny' named entity 'PHYLOGENY' named entity 'THESE' named entity 'DATABASE' named entity 'CENTRE' named entity 'RIGHTS' named entity 'RESOURCE' named entity 'ACTIVE' named entity 'PERMISSIONS' named entity 'COVID-19' named entity 'RESEARCH' named entity 'COMPLETE' named entity 'TRANSCRIPTION' named entity 'FREE' named entity 'COCCOLITHOVIRUS' named entity 'PROFILE' named entity 'MEANS' named entity 'REPOSITORIES' named entity 'USE' named entity 'VIRUSES' named entity 'GENOME SEQUENCE' named entity 'UNRESTRICTED' named entity 'LONG' named entity 'WILSON' named entity 'ORIGINAL SOURCE' named entity 'FORM' named entity 'FUNDED' named entity 'LYTIC PHASE' named entity 'Coccolithovirus' named entity 're-use' named entity 'original source' named entity 'resource centre' named entity 'COVID-19' named entity 'genome sequence' named entity 'Phylogeny' named entity 'Viruses' named entity 'genomes' named entity 'viruses' named entity 'zoonotic' named entity 'poliovirus' named entity 'recombination' named entity 'Phylogeny' named entity 'JC polyomavirus' named entity 'antiviral drugs' named entity 'primates' named entity 'phylogenetic analysis' named entity 'recombination' named entity 'bootstrap' named entity 'graph theory' named entity 'protein sequences' named entity 'phylogentic' named entity 'human population' named entity 'phylogeny' named entity 'polynucleotide' named entity 'viruses' named entity 'root position' named entity 'RNA' named entity 'field of study' named entity 'viruses' named entity 'herpesviruses' named entity 'statistical power' named entity 'Europe' named entity 'evolution' named entity 'phylogeny' named entity 'virus isolation' named entity 'virus' named entity 'life cycles' named entity 'virus classification' named entity 'phylogeny' named entity 'phylogeny' named entity 'HIV' named entity 'phylogenetic analysis' named entity 'inter-species' named entity 'SARS coronavirus' named entity 'HIV' named entity 'biological species' named entity 'rabies virus' named entity 'Phylogenetic analysis' named entity 'virus'

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