About: Epidemiological investigation reveals genetic diversity and high co-infection rate of canine bocavirus strains circulating in Heilongjiang province, Northeast China

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About: Epidemiological investigation reveals genetic diversity and high co-infection rate of canine bocavirus strains circulating in Heilongjiang province, Northeast China Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Epidemiological investigation reveals genetic diversity and high co-infection rate of canine bocavirus strains circulating in Heilongjiang province, Northeast China
Creator	Feng, Li Geng, Yufei Guo, Donghua Li, Chunqiu Su, Mingjun Sun, Dongbo Wang, Enyu Wang, Xinyu Wang, Zhihui Wei, Shan Zhao, Xiwen Yao, Shuang Chang, Yung-Fu
topic	covid:96b1f2242a44d0311dc463bc9e0b330ca08a12d4#this
Source	Elsevier; Medline; PMC
abstract	Abstract To trace evolution of CBoV in Northeast China, 201 fecal samples from rectal swabs of diarrheic dogs collected from May 2014 to April 2015 were investigated using PCR targeting partial NS1 gene (440bp). Furthermore, phylogenetic analysis of the identified CBoV strains was conducted using nucleotide sequences of the partial NS1 gene. The results indicated that 15 of 201 fecal samples (7.5%) were positive for CBoV; the partial NS1 genes of the 15 CBoV strains exhibited 83.1%–100% nucleotide identity, and 75.8%–100% amino acid identity; the entire VP2 gene of five selected CBoV strains exhibited 82.9%–96.8% nucleotide identity, and 90.4%–99.1% amino acid identity. The 15 CBoV strains exhibited high co-infection rates with CPV-2 (40%), CCoV (20%), and CaKV (26.67%). Phylogenetic analysis of the partial NS1 gene revealed that the 15 CBoV strains were divided into different subgroups of CBoV-2 when compared with CBoV-2 strains from South Korea, USA, Germany, and Hong Kong in China. Moreover, phylogenetic analysis of the VP2 gene indicated that five selected CBoV strains were divided into three different genetic groups of CBoV-2, involving in CBoV-2HK group, CBoV-2C group, and CBoV-2B group. The recombination analysis using the entire VP2 gene revealed three potential recombination events that occurred among five selected strains in our study. These data demonstrated that the CBoV strains circulating in Heilongjiang province, Northeast China showed genetic diversities, potential recombination events, and high co-infection rate. Further studies will be required to address the potential pathogenic role of these diverse CBoV strains.
has issue date	2016-06-30(xsd:dateTime)
bibo:doi	10.1016/j.rvsc.2016.03.003
bibo:pmid	27234529
has license	els-covid
sha1sum (hex)	96b1f2242a44d0311dc463bc9e0b330ca08a12d4
schema:url	https://doi.org/10.1016/j.rvsc.2016.03.003
resource representing a document's title	Epidemiological investigation reveals genetic diversity and high co-infection rate of canine bocavirus strains circulating in Heilongjiang province, Northeast China
has PubMed Central identifier	PMC7111776
has PubMed identifier	27234529
schema:publication	Research in Veterinary Science
resource representing a document's body	covid:96b1f2242a44d0311dc463bc9e0b330ca08a12d4#body_text
is http://vocab.deri.ie/void#inDataset of	proxy:http/ns.inria.fr/covid19/96b1f2242a44d0311dc463bc9e0b330ca08a12d4
is schema:about of	named entity 'HEILONGJIANG PROVINCE' named entity 'co-infection' named entity 'divided' named entity 'strains' named entity 'NS1' named entity 'rectal' named entity 'reveals' named entity 'NORTHEAST' named entity 'CANINE BOCAVIRUS' named entity 'ANALYSIS' named entity 'DOGS' named entity 'GERMANY' named entity 'INVOLVING' named entity 'TARGETING' named entity 'THESE' named entity 'INVESTIGATED' named entity 'OCCURRED' named entity 'CO-INFECTION' named entity 'POSITIVE FOR' named entity 'DIVERSE' named entity 'INFECTION RATE' named entity 'CHINA' named entity 'OUR' named entity 'COLLECTED' named entity 'VP2' named entity 'RECOMBINATION' named entity 'NORTHEAST' named entity 'CIRCULATING' named entity 'HIGH' named entity 'STRAINS' named entity 'REVEALS' named entity 'GENETIC DIVERSITY' named entity 'INVESTIGATION' named entity 'HEILONGJIANG PROVINCE' named entity 'PHYLOGENETIC ANALYSIS' named entity 'USA' named entity 'HONG KONG' named entity 'STRAINS' named entity 'EPIDEMIOLOGICAL' named entity 'CHINA' named entity 'STUDY' named entity 'SOUTH KOREA' named entity 'ADDRESS' named entity 'ROLE' named entity 'FECAL' named entity 'GENE' named entity 'INFECTION RATE' named entity 'CO-INFECTION' named entity 'TRACE' named entity 'PARTIAL' named entity '100%' named entity 'CIRCULATING' named entity 'ENTIRE' named entity 'EVOLUTION' named entity 'RATES' named entity 'NUCLEOTIDE' named entity 'PATHOGENIC' named entity 'RESULTS' named entity 'INDICATED' named entity 'STUDIES' named entity 'SUBGROUPS' named entity 'RECTAL' named entity 'DATA' named entity 'NUCLEOTIDE SEQUENCES' named entity 'IDENTITY' named entity 'EVENTS' named entity 'DIVIDED'

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