About: Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri

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About: Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri
Creator	Bai, Changming Cai, Yuyong Chen, Haixia Huang, Jie Ren, Weicheng Renault, Tristan Wang, Chongming
Source	Medline; PMC
abstract	BACKGROUND: Acute viral necrosis virus (AVNV) is the causative agent of a serious disease resulting in high mortality in cultured Chinese scallops, Chlamys farreri. We have sequenced and analyzed the complete genome of AVNV. RESULTS: The AVNV genome is a linear, double-stranded DNA molecule of 210,993 bp with a nucleotide composition of 38.5% G + C. A total of 123 open reading frames were predicted to encode functional proteins, ranging from 41 to 1,878 amino acid residues. The DNA sequence of AVNV is 97% identical to that of ostreid herpesvirus 1 (OsHV-1), and the amino acid sequences of the encoded proteins of these two viruses are 94-100% identical. The genomic organization of AVNV is similar to that of OsHV-1, and consists of two unique regions (170.4 kb and 3.4 kb, respectively), each flanked by two inverted repeats (7.6 kb and 10.2 kb, respectively), with a third unique region (1.5 kb) situated between the two internal repeats. CONCLUSIONS: Our results indicate that AVNV is a variant of OsHV-1. The AVNV genome sequence provides information useful for understanding the evolution and divergence of OsHV-1 in marine molluscs.
has issue date	2013-04-08(xsd:dateTime)
bibo:doi	10.1186/1743-422x-10-110
bibo:pmid	23566284
has license	cc-by
sha1sum (hex)	94156e6941fe78191b5997cdeb10cb3fd06e1221
schema:url	https://doi.org/10.1186/1743-422x-10-110
resource representing a document's title	Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri
has PubMed Central identifier	PMC3623871
has PubMed identifier	23566284
schema:publication	Virol J
resource representing a document's body	covid:94156e6941fe78191b5997cdeb10cb3fd06e1221#body_text
is schema:about of	named entity 'GENOME SEQUENCE' named entity 'genome' named entity 'molecule' named entity 'ranging' named entity 'encode' named entity 'genome' named entity 'CHINESE' named entity 'MASSIVE' named entity 'SCALLOP' named entity 'CULTURED' named entity 'NECROSIS' named entity 'OUR' named entity 'PREDICTED' named entity 'ANALYZED' named entity 'ORGANIZATION' named entity 'DISEASE' named entity 'UNDERSTANDING' named entity 'A NUCLEOTIDE' named entity 'OSTREID HERPESVIRUS 1' named entity 'REGION' named entity 'DNA MOLECULE' named entity '210' named entity 'VARIANT' named entity 'TOTAL' named entity 'UNIQUE' named entity 'ENCODED' named entity 'VIRAL' named entity 'DNA SEQUENCE' named entity 'EVOLUTION' named entity 'FLANKED' named entity 'GENOMIC' named entity '3.4' named entity 'PROTEINS' named entity 'FUNCTIONAL' named entity 'RESULTS' named entity 'CHLAMYS FARRERI' named entity 'DOUBLE-STRANDED DNA' named entity 'VIRUS' named entity '100%' named entity 'CHINESE' named entity 'ACUTE' named entity 'CAUSATIVE AGENT' named entity 'IDENTICAL' named entity 'OPEN READING FRAMES' named entity 'MORTALITY' named entity 'HAVE' named entity 'SCALLOPS' named entity 'CONCLUSIONS' named entity 'PROVIDES' named entity 'GENOME SEQUENCE' named entity 'RESULTING IN' named entity 'ENCODE' covid:arg/94156e6941fe78191b5997cdeb10cb3fd06e1221 named entity 'COMPLETE' named entity 'USEFUL' named entity 'MARINE' named entity 'HIGH' named entity 'OUTBREAKS' named entity 'VIRAL' named entity 'MORTALITY' named entity 'IS A' named entity 'VIRUS ASSOCIATED' named entity 'REGIONS' named entity 'SIMILAR' named entity 'INTERNAL' named entity 'AMINO ACID' named entity 'MOLLUSCS' named entity 'INVERTED' named entity 'AMINO ACID SEQUENCES' named entity 'GENOME' named entity 'CHLAMYS FARRERI' named entity 'NECROSIS' named entity 'REPEATS' named entity 'COMPOSITION' named entity 'COMPLETE'

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