About: Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19

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About: Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19 Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19
Creator	Zhou, En-Min Vipond, Richard Aljabr, Waleed Zhao, Qin Bogaert, Debby Davidson, Andrew Solomon, Tom Druce, Julian Openshaw, Peter Bewley, Kevin Hiscox, Julian Matthews, David Sun, Yani Carroll, Miles Beadsworth, Michael Kenneth Baillie, J Ng, Lisa Semple, Malcolm Crook, Derrick Pullan, Steven Alruwaili, Muhannad Carter, Daniel Cruise, James Dong, Xiaofeng Hartley, Catherine Mahmood, Zana Moore, Shona Penrice-Randal, Rebekah Renia, Laurent Turtle, Lance
source	MedRxiv
abstract	COVID-19 is a complex disease phenotype where the underlying microbiome could influence morbidity and mortality. Amplicon and metagenomic MinION based sequencing was used to rapidly (within 8 hours) identify SARS-CoV-2 and assess the microbiome in nasopharyngeal swabs obtained from patients with COVID-19 by the ISARIC 4C consortium.
has issue date	2020-03-08(xsd:dateTime)
bibo:doi	10.1101/2020.03.05.20032011
has license	medrxiv
sha1sum (hex)	93d8f1552a81587e2f88e38580cbe4753b9934f1
schema:url	https://doi.org/10.1101/2020.03.05.20032011
resource representing a document's title	Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19
resource representing a document's body	covid:93d8f1552a81587e2f88e38580cbe4753b9934f1#body_text
is schema:about of	named entity 'influence' named entity 'assess' named entity 'disease' named entity 'metagenomic' named entity 'WHERE' named entity 'ASSESS' named entity 'NASOPHARYNGEAL' named entity 'OBTAINED' named entity 'BASED' named entity 'SWABS' named entity 'COVID-19' named entity 'SEQUENCING' named entity 'PATIENTS' named entity 'NASOPHARYNGEAL' named entity 'AMPLICON' named entity 'BASED' named entity '8 HOURS' named entity 'IS A' named entity 'DISEASE PHENOTYPE' named entity 'CONSORTIUM' named entity 'PATIENTS' named entity 'IDENTIFY' named entity 'COMPLEX DISEASE' named entity 'SWABS' named entity 'COVID-19' named entity 'SEQUENCING' named entity 'MORBIDITY AND MORTALITY' named entity 'INFLUENCE' named entity 'UNDERLYING' named entity 'SARS-COV-2' named entity 'AMPLICON' named entity 'RAPIDLY' named entity 'MICROBIOME' named entity 'USED' named entity 'SARS-COV-2' named entity 'microbiome' named entity 'COVID-19' named entity 'mortality' named entity 'SARS-CoV-2' named entity 'metagenomic' named entity 'COVID' named entity 'microbiome' named entity 'Amplicon' named entity 'metagenomic' named entity 'Amplicon' named entity 'nasopharyngeal swabs' named entity 'SARS-CoV-2' named entity 'dengue' named entity 'oropharyngeal' named entity 'amplicon' named entity 'cDNA' named entity 'primers' named entity 'life-threatening disease' named entity 'amplicons' named entity 'SARS-CoV-2' named entity 'amplicon'

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