About: Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia

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About: Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia
Creator	Buchy, Philippe Goldstein, Tracey Afelt, Aneta Frutos, Roger San, Sorn Dussart, Philippe Khammavong, Kongsy Theppangna, Watthana Chea, Sokha Duong, Veasna Greatorex, Zoe Hassanin, Alexandre Hul, Vibol Keatts, Lucy Lacroix, Audrey Olson, Sarah Omaliss, Keo Silithammavong, Soubanh Singhalath, Sinpakone Joly, Damien Fine, Amanda
topic	covid:925c5f80ce59c95f2a32a100bdbcc3d11677c67e#this
Source	Elsevier; Medline; PMC
abstract	South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family Pteropodidae) (n = 55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from Pipistrellus coromandra fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 Myotis bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely Macroglossus sp., Megaerops niphanae and Myotis horsfieldii
has issue date	2016-12-06(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2016.11.029
bibo:pmid	27932284
has license	no-cc
sha1sum (hex)	925c5f80ce59c95f2a32a100bdbcc3d11677c67e
schema:url	https://doi.org/10.1016/j.meegid.2016.11.029
resource representing a document's title	Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia
has PubMed Central identifier	PMC7106194
has PubMed identifier	27932284
schema:publication	Infect Genet Evol
resource representing a document's body	covid:925c5f80ce59c95f2a32a100bdbcc3d11677c67e#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/925c5f80ce59c95f2a32a100bdbcc3d11677c67e
is schema:about of	named entity 'diarrhea' named entity 'strain' named entity 'MERS-CoV' named entity 'severe' named entity 'frugivorous' named entity 'zoonotic' named entity 'RESPIRATORY' named entity 'MEGAEROPS NIPHANAE' named entity 'CLUSTERED' named entity 'KNOWN' named entity 'MYOTIS' named entity 'IS A' named entity 'BELONGING' named entity 'ACUTE' named entity 'GROUP' named entity 'COUNTRIES' named entity 'PREVIOUSLY' named entity 'PRESENCE OF' named entity 'OUR' named entity 'SARS-COV' named entity 'INDONESIA' named entity 'THAILAND' named entity 'HIGH' named entity 'PATHOGENIC' named entity 'COULD REPRESENT' named entity 'FELL' named entity 'LAO' named entity 'MACROGLOSSUS' named entity 'POPULATIONS' named entity 'RISK' named entity 'RELATED' named entity 'LAO' named entity 'GENETIC DIVERSITY' named entity 'MYOTIS HORSFIELDII' named entity 'SPECIES' named entity 'BETA-COV' named entity 'ALPHA' named entity 'IDENTIFIED' named entity 'HOT SPOT' named entity 'VARIOUS' named entity 'INCLUDES' named entity 'PTEROPODIDAE' named entity 'SYNDROME' named entity 'THESE' named entity 'HUMANS' named entity 'SEQUENCE ANALYSIS' named entity 'PDR' named entity 'MERS-COV' named entity 'HAVE' named entity 'PEDV' named entity 'KNOWLEDGE' named entity 'EXPAND' named entity 'DIVERSE' named entity 'SEQUENCES' named entity 'SEVERE ACUTE RESPIRATORY SYNDROME' named entity 'HOST' named entity 'SOUTH' named entity 'WORK' named entity 'BAT'

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