About: Phylogenetic Analyses of Rotavirus A from Cattle in Uruguay Reveal the Circulation of Common and Uncommon Genotypes and Suggest Interspecies Transmission

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About: Phylogenetic Analyses of Rotavirus A from Cattle in Uruguay Reveal the Circulation of Common and Uncommon Genotypes and Suggest Interspecies Transmission Goto Sponge NotDistinct Permalink

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Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Phylogenetic Analyses of Rotavirus A from Cattle in Uruguay Reveal the Circulation of Common and Uncommon Genotypes and Suggest Interspecies Transmission
Creator	Parreño, Viviana Giannitti, Federico Castells, Matías Colina, Rodney Victoria, Matías Castells, Daniel Riet-Correa, Franklin Casaux, María Schild, Carlos Castells, Felipe Miño, Samuel Darío Caffarena, Rubén
topic	covid:80b3aa57a7e50758aac4124b3a26f4c7ed7dce2d#this
Source	PMC
abstract	Uruguay is one of the main exporters of beef and dairy products, and cattle production is one of the main economic sectors in this country. Rotavirus A (RVA) is the main pathogen associated with neonatal calf diarrhea (NCD), a syndrome that leads to significant economic losses to the livestock industry. The aims of this study are to determine the frequency of RVA infections, and to analyze the genetic diversity of RVA strains in calves in Uruguay. A total of 833 samples from dairy and beef calves were analyzed through RT-qPCR and sequencing. RVA was detected in 57.0% of the samples. The frequency of detection was significantly higher in dairy (59.5%) than beef (28.4%) calves (p < 0.001), while it did not differ significantly among calves born in herds that were vaccinated (64.0%) or not vaccinated (66.7%) against NCD. The frequency of RVA detection and the viral load were significantly higher in samples from diarrheic (72.1%, 7.99 log(10) genome copies/mL of feces) than non-diarrheic (59.9%, 7.35 log(10) genome copies/mL of feces) calves (p < 0.005 and p = 0.007, respectively). The observed G-types (VP7) were G6 (77.6%), G10 (20.7%), and G24 (1.7%), while the P-types were P[5] (28.4%), P[11] (70.7%), and P[33] (0.9%). The G-type and P-type combinations were G6P[11] (40.4%), G6P[5] (38.6%), G10P[11] (19.3%), and the uncommon genotype G24P[33] (1.8%). VP6 and NSP1-5 genotyping were performed to better characterize some strains. The phylogenetic analyses suggested interspecies transmission, including transmission between animals and humans.
has issue date	2020-07-14(xsd:dateTime)
bibo:doi	10.3390/pathogens9070570
bibo:pmid	32674420
has license	cc-by
sha1sum (hex)	80b3aa57a7e50758aac4124b3a26f4c7ed7dce2d
schema:url	https://doi.org/10.3390/pathogens9070570
resource representing a document's title	Phylogenetic Analyses of Rotavirus A from Cattle in Uruguay Reveal the Circulation of Common and Uncommon Genotypes and Suggest Interspecies Transmission
has PubMed Central identifier	PMC7400708
has PubMed identifier	32674420
schema:publication	Pathogens
resource representing a document's body	covid:80b3aa57a7e50758aac4124b3a26f4c7ed7dce2d#body_text
is http://vocab.deri.ie/void#inDataset of	proxy:http/ns.inria.fr/covid19/80b3aa57a7e50758aac4124b3a26f4c7ed7dce2d
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