About: Analysis of codon usage in type 1 and the new genotypes of duck hepatitis virus

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About: Analysis of codon usage in type 1 and the new genotypes of duck hepatitis virus Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Analysis of codon usage in type 1 and the new genotypes of duck hepatitis virus
Creator	Zhang, Jie Wang, Meng Zhao, Feng Zhou, Jian-Hua Chen, Hao-Tai Ding, Yao-Zhong Gu, Yuan-Xing Liu, Wen-Qian Liu, Yong-Sheng Ma, Li-Na
Source	Elsevier; Medline; PMC
abstract	Abstract In this study, an abundant (A+U)% and low codon bias were revealed in duck hepatitis virus type 1 (DHV-1) and the new serotype strains isolated from Taiwan, South Korea and Mainland China (DHV-N). The general correlation between base composition and codon usage bias suggests that mutational pressure rather than natural selection is the main factor that determines the codon usage bias in these samples. By comparative analysis of the codon usage patterns of 40 ORFs of DHV, we found that all of DHV-1 strains grouped in genotype C; the DHV-N strains isolated in South Korea and China clustered into genotypes B; and the DHV-N strains isolated from Taiwan clustered into genotypes A. The findings revealed that more than one subtype of DHV-1 circulated in East Asia. Furthermore, the results of phylogenetic analyses based on RSCU values and Clustal W method indicated obvious phylogenetic congruities. This suggested that better genome consistency of DHV may exist in nature and phylogenetic analyses based on RSCU values maybe a good method in classifying genotypes of the virus. Our work might give some clues to the features and some evolutionary information of DHV.
has issue date	2011-10-31(xsd:dateTime)
bibo:doi	10.1016/j.biosystems.2011.06.005
bibo:pmid	21708221
has license	els-covid
sha1sum (hex)	7cb70b41e55103d9c002cf25bb675c244a62e44c
schema:url	https://doi.org/10.1016/j.biosystems.2011.06.005
resource representing a document's title	Analysis of codon usage in type 1 and the new genotypes of duck hepatitis virus
has PubMed Central identifier	PMC7117032
has PubMed identifier	21708221
schema:publication	Biosystems
resource representing a document's body	covid:7cb70b41e55103d9c002cf25bb675c244a62e44c#body_text
is schema:about of	named entity 'CODON USAGE' named entity 'composition' named entity 'values' named entity 'findings' named entity 'base' named entity 'ANALYSIS' named entity 'CONSISTENCY' named entity 'CLASSIFYING' named entity 'VIRUS' named entity 'TAIWAN' named entity 'OBVIOUS' named entity 'INFORMATION' named entity 'CODON USAGE BIAS' named entity '28A' named entity 'CIRCULATED' named entity 'CLUSTAL' named entity 'GENOME' named entity 'FACTOR' named entity 'GROUPED' named entity 'WORK' named entity 'REVEALED' named entity 'THESE' named entity 'NEW' named entity 'FOUND' named entity 'SEROTYPE' named entity 'ISOLATED' named entity 'INDICATED' named entity 'BASE COMPOSITION' named entity 'NATURAL SELECTION' named entity 'VALUES' named entity 'GENOTYPES' named entity 'ORFS' named entity 'METHOD' named entity 'SOUTH KOREA' named entity 'GENOTYPE' named entity 'CODON BIAS' named entity 'LOW' named entity 'FINDINGS' named entity 'CORRELATION' named entity 'PATTERNS' named entity 'STUDY' named entity 'MAINLAND CHINA' named entity 'EAST ASIA' named entity 'EXIST' named entity 'MAIN' named entity 'MORE THAN ONE' named entity 'FEATURES' named entity 'STRAINS' named entity 'OUR' named entity 'DUCK HEPATITIS VIRUS' named entity 'GENOTYPES' named entity 'TYPE 1' named entity 'SAMPLES' named entity 'SUBTYPE' named entity 'GOOD' named entity 'CODON USAGE' named entity 'GENERAL' named entity 'CLUSTERED' named entity 'DUCK HEPATITIS VIRUS TYPE 1' named entity 'RATHER' named entity 'NATURE' named entity 'ABUNDANT' named entity 'BETTER' named entity 'BASED' named entity 'COMPARATIVE ANALYSIS' named entity 'PRESSURE' named entity 'RESULTS' named entity 'CHINA' named entity 'NEW' named entity 'MAYBE' covid:arg/7cb70b41e55103d9c002cf25bb675c244a62e44c named entity 'nature'

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