About: Detection and molecular characterization of porcine group C rotaviruses in South Korea()

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About: Detection and molecular characterization of porcine group C rotaviruses in South Korea() Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Detection and molecular characterization of porcine group C rotaviruses in South Korea()
Creator	Cho, Kyoung-Oh Kang, Mun-Il Park, Sang-Ik Park, Su-Jin Jeong, Young-Ju Kim, Hyun-Jeong Kwon, Hyung-Jun Hosmillo, Myra Chun, Young-Hyun Kang, Shien-Young Kim, Gye-Yeop Shin, Dong-Jun Woo, Sang-Kyu
topic	covid:7a3b7a523852b2547e7ca38a08c4b8392e7762ef#this
Source	Elsevier; Medline; PMC
abstract	Group C rotaviruses (GCRVs) cause acute diarrhea in humans and animals worldwide and the evidence for a possible zoonotic role of GCRVs has been recently provided. However, there is little evidence of porcine GCRV infections or of their genetic diversity in South Korea. We examined 137 diarrheic fecal specimens from 55 farms collected from six provinces. RT-PCR utilizing primer pairs specific for the GCRV VP6 gene detected GCRV-positive reactions in 36 (26.2%) diarrheic fecal samples. Of these, 17 samples (12.4%) tested positive for porcine GCRVs alone and 19 samples (13.8%) were also positive for other pathogens. Other enteric pathogens except for GCRV were detected in 64 feces samples (46.7%) and no enteric pathogens were evident in 37 feces samples (27.0%). Phylogenetic and sequence homology analyses of GCRV partial VP6 gene between 23 Korean and other known porcine GCRVs demonstrated that Korean strains belonged to the porcine lineage. Furthermore, one Korean porcine strain shared the highest nucleotide (89.7–89.0%) and deduced amino acid sequence (92.9–93.9%) identities with bovine GCRV strains and was placed in the bovine GCRV lineage indicative of bovine origin. In conclusion, porcine GCRV infections are widespread in piglets with diarrhea in South Korea. The infecting porcine GCRVs mostly belong to the porcine lineage with the exception of one bovine-like GCRV, which possibly originated from bovine GCRV due to interspecies transmission.
has issue date	2009-09-18(xsd:dateTime)
bibo:doi	10.1016/j.vetmic.2009.03.024
bibo:pmid	19362434
has license	no-cc
sha1sum (hex)	7a3b7a523852b2547e7ca38a08c4b8392e7762ef
schema:url	https://doi.org/10.1016/j.vetmic.2009.03.024
resource representing a document's title	Detection and molecular characterization of porcine group C rotaviruses in South Korea()
has PubMed Central identifier	PMC7117287
has PubMed identifier	19362434
schema:publication	Vet Microbiol
resource representing a document's body	covid:7a3b7a523852b2547e7ca38a08c4b8392e7762ef#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/7a3b7a523852b2547e7ca38a08c4b8392e7762ef
is schema:about of	named entity 'porcine' named entity 'South Korea' named entity 'porcine' named entity 'bovine' named entity 'Rotavirus' named entity 'RT-PCR' named entity 'epidemiology' named entity 'bovine' named entity 'South Korea' named entity 'porcine' named entity 'United States' named entity 'porcine' named entity 'viral particles' named entity 'homologous' named entity 'porcine' named entity 'genetic divergence' named entity 'porcine' named entity 'genetic relationship' named entity 'coinfection' named entity 'sapovirus' named entity 'amino acid sequence' named entity 'porcine' named entity 'porcine' named entity 'porcine' named entity 'porcine' named entity 'South Korea' named entity 'virus' named entity 'VP6' named entity 'human populations' named entity 'phosphate-buffered saline' named entity 'spp' named entity 'diarrhea' named entity 'VP6' named entity 'feces' named entity 'diarrhea' named entity 'sequence comparison' named entity 'primer pairs' named entity 'porcine' named entity 'zoonotic' named entity 'rotavirus vaccine' named entity 'pathogens' named entity 'Salmonella' named entity 'interspecies transmission' named entity 'bovine' named entity 'rotavirus' named entity 'diarrhea' named entity 'porcine' named entity 'amino acid sequence' named entity 'viral particles' named entity 'porcine' named entity 'porcine' named entity 'transmissible gastroenteritis coronavirus' named entity 'nucleotide' named entity 'Phylogenetic' named entity 'porcine' named entity 'sequence similarity search' named entity 'porcine' named entity 'porcine' named entity 'genetic characteristics' named entity 'amino acid sequence' named entity 'gene' named entity 'transmissible gastroenteritis coronavirus' named entity 'porcine' named entity 'gene' named entity 'staining' named entity 'porcine' named entity 'Shintoku'

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