About: Genetic characterization of bovine coronavirus in Vietnam

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About: Genetic characterization of bovine coronavirus in Vietnam Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genetic characterization of bovine coronavirus in Vietnam
Creator	An, Dong-Jun Cho, In-Soo Park, Gyu-Nam Shin, Jihye Bui, · Cha, Mi Choe, Seeun Dongseob Tark, · Lan, Thi Le, Phan Nguyen, · Ra, · To, Thi Van, ·
Source	Medline; PMC
abstract	A maximum clade credibility tree constructed using the full-length spike (S) and hemagglutinin-esterase genes revealed that Vietnamese Bovine coronavirus (BCoV) strains belong to a single cluster (C1); therefore, they might share a common origin with Cuban and Chinese BCoV strains. The omega values of cluster 1 (C1) and cluster 2 (C2) were 0.15734 and 0.11613, respectively, and naive empirical bayes analysis identified two amino acid positions (179 and 501) in the S protein in C1 and three amino acid positions (113, 501, and 525) in that of C2 that underwent positive selection (p > 99%). The evolutionary rate of C1 was estimated to be 7.6206 × 10(−4) substitutions/site/year, and the most recent common ancestor (tMRCA) of Vietnamese BCoVs was estimated to date back to 1962 (95% HPD 1950–1973). The effective population sizes of C1 and C2 underwent a rapid reduction after 2000 and 2004, respectively. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s11262-019-01647-1) contains supplementary material, which is available to authorized users.
has issue date	2019-02-15(xsd:dateTime)
bibo:doi	10.1007/s11262-019-01647-1
bibo:pmid	30771080
has license	no-cc
sha1sum (hex)	70052649957e46d75890b555db69870d49d35c28
schema:url	https://doi.org/10.1007/s11262-019-01647-1
resource representing a document's title	Genetic characterization of bovine coronavirus in Vietnam
has PubMed Central identifier	PMC7088966
has PubMed identifier	30771080
schema:publication	Virus Genes
resource representing a document's body	covid:70052649957e46d75890b555db69870d49d35c28#body_text
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is wasQuotedFrom of	covid:arg/70052649957e46d75890b555db69870d49d35c28/0 covid:arg/70052649957e46d75890b555db69870d49d35c28/1
is part of of	A maximum clade credibility tree constructed using the full-length spike (S) and hemagglutinin-esterase genes revealed that Vietnamese Bovine coronavirus (BCoV) strains belong to a single cluster (C1); therefore, they might share a common origin with Cuban and Chinese BCoV strains. The omega values of cluster 1 (C1) and cluster 2 (C2) were 0.15734 and 0.11613, respectively, and naive empirical bayes analysis identified two amino acid positions (179 and 501) in the S protein in C1 and three amino acid positions (113, 501, and 525) in that of C2 that underwent positive selection (p > 99%). The evolutionary rate of C1 was estimated to be 7.6206 × 10(−4) substitutions/site/year, and the most recent common ancestor (tMRCA) of Vietnamese BCoVs was estimated to date back to 1962 (95% HPD 1950–1973). The effective population sizes of C1 and C2 underwent a rapid reduction after 2000 and 2004, respectively. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s11262-019-01647-1) contains supplementary material, which is available to authorized users. Genetic characterization of bovine coronavirus in Vietnam covid:70052649957e46d75890b555db69870d49d35c28#body_text

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