About: Detection and molecular characterization of sapoviruses in dogs

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About: Detection and molecular characterization of sapoviruses in dogs Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Detection and molecular characterization of sapoviruses in dogs
Creator	Buonavoglia, Canio Elia, Gabriella Martella, Vito Lorusso, Eleonora Bányai, Krisztián Marsilio, Fulvio Melegari, Irene Cavalli, Alessandra Bodnar, Livia Lanave, Gianvito Martino, Barbara Profio, Federica
Source	Elsevier; Medline; PMC
abstract	Caliciviruses are important human and animal pathogens. Novel caliciviruses have been identified recently in dogs, raising questions about their pathogenic role and concerns regarding their zoonotic potential. By screening stool samples of young or juvenile dogs using RT-PCR assays, sapoviruses (SaVs) were found in 7/320 (2.2%) samples of animals with acute gastroenteritis while they were not detected in healthy animals (0/119). The sequence of a nearly 3 kb portion at the 3′ end of the genome, encompassing the RNA-dependent RNA polymerase (RdRp), the capsid region (ORF1) and the ORF2 were determined for three strains. A distinctive genetic feature in canine SaVs was a 4-nucleotide (nt) interval between the ORF1 and ORF2. Two strains (Bari/4076/07/ITA and Bari/253/07/ITA) were very closely related in the RdRp and capsid regions to the strain AN210D/09/USA (90.4–93.9% nt), while strain Bari/5020/07/ITA displayed only 71.0–72.0% nt identity to this group of canine SaVs and 76.0% to strain AN196/09/USA. Overall, these findings indicate that the canine SaVs detected in Italy may represent distinct capsid types, although all currently known SaVs segregate into the novel proposed genogroup, tentatively named as GXIII.
has issue date	2015-11-30(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2015.11.034
bibo:pmid	26658065
has license	no-cc
sha1sum (hex)	691a6a3dad9e81040d21e77bf879b7447993c026
schema:url	https://doi.org/10.1016/j.meegid.2015.11.034
resource representing a document's title	Detection and molecular characterization of sapoviruses in dogs
has PubMed Central identifier	PMC7106069
has PubMed identifier	26658065
schema:publication	Infect Genet Evol
resource representing a document's body	covid:691a6a3dad9e81040d21e77bf879b7447993c026#body_text
is schema:about of	named entity 'ORF1' named entity 'encompassing' named entity 'genome' named entity 'polymerase' named entity 'Bari' named entity 'ORF1' named entity 'ROLE' named entity 'DETECTED' named entity 'THESE' named entity 'ACUTE GASTROENTERITIS' named entity 'PATHOGENIC' named entity 'INTERVAL' named entity 'DETERMINED' named entity 'ZOONOTIC' named entity 'RECENTLY' named entity 'REPRESENT' named entity 'CANINE' named entity 'STRAINS' named entity 'SAMPLES' named entity 'DOGS' named entity 'GENETIC' named entity 'NOVEL' named entity 'SAPOVIRUSES' named entity 'MOLECULAR' named entity 'DETECTION' named entity 'DISTINCT' named entity 'FEATURE' named entity 'HAVE' named entity 'OVERALL' named entity 'GENOME' named entity 'ABOUT' named entity 'ANIMAL PATHOGENS' named entity 'STOOL' named entity 'RDRP' named entity 'NOT DETECTED' named entity 'PORTION' named entity 'JUVENILE' named entity 'DISPLAYED' named entity 'END' named entity 'SEQUENCE' named entity 'IDENTIFIED' named entity 'FOUND' named entity 'CHARACTERIZATION' named entity 'RT-PCR' named entity 'ORF2' named entity 'RNA-DEPENDENT RNA POLYMERASE' named entity 'GROUP' named entity '282' named entity 'YOUNG' named entity 'ANIMALS' named entity 'KNOWN' named entity 'PROPOSED' named entity 'HEALTHY' named entity 'SAVS' named entity 'IMPORTANT' named entity 'SAPOVIRUSES' named entity 'NAMED' named entity 'DOGS' named entity 'STRAIN' named entity 'SEGREGATE' named entity 'ITALY' named entity 'SCREENING' named entity 'RELATED' named entity 'POTENTIAL' named entity 'ORF1' named entity 'TYPES' named entity 'BARI' named entity 'IDENTITY' named entity 'CAPSID' named entity 'CONCERNS'

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