About: Identification and Survey of a Novel Avian Coronavirus in Ducks

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Identification and Survey of a Novel Avian Coronavirus in Ducks
Creator	Shao, S Liu, K-C Wang, Q-Y Zhuang, G-Q
Source	Medline; PMC
abstract	The rapid discovery of novel viruses using next generation sequencing (NGS) technologies including DNA-Seq and RNA-Seq, has greatly expanded our understanding of viral diversity in recent years. The timely identification of novel viruses using NGS technologies is also important for us to control emerging infectious diseases caused by novel viruses. In this study, we identified a novel duck coronavirus (CoV), distinct with chicken infectious bronchitis virus (IBV), using RNA-Seq. The novel duck-specific CoV was a potential novel species within the genus Gammacoronavirus, as indicated by sequences of three regions in the viral 1b gene. We also performed a survey of CoVs in domestic fowls in China using reverse-transcription polymerase chain reaction (RT-PCR), targeting the viral nucleocapsid (N) gene. A total of 102 CoV positives were identified through the survey. Phylogenetic analysis of the viral N sequences suggested that CoVs in domestic fowls have diverged into several region-specific or host-specific clades or subclades in the world, and IBVs can infect ducks, geese and pigeons, although they mainly circulate in chickens. Moreover, this study provided novel data supporting the notion that some host-specific CoVs other than IBVs circulate in ducks, geese and pigeons, and indicated that the novel duck-specific CoV identified through RNA-Seq in this study is genetically closer to some CoVs circulating in wild water fowls. Taken together, this study shed new insight into the diversity, distribution, evolution and control of avian CoVs.
has issue date	2013-08-30(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0072918
bibo:pmid	24023656
has license	cc-by
sha1sum (hex)	63f776d8ae5084cc5a3aa5e09aa55f1a302b1b1f
schema:url	https://doi.org/10.1371/journal.pone.0072918
resource representing a document's title	Identification and Survey of a Novel Avian Coronavirus in Ducks
has PubMed Central identifier	PMC3758261
has PubMed identifier	24023656
schema:publication	PLoS One
resource representing a document's body	covid:63f776d8ae5084cc5a3aa5e09aa55f1a302b1b1f#body_text
is schema:about of	named entity 'SURVEY' named entity 'control' named entity 'gene' named entity 'viral' named entity 'geese' named entity 'rapid' named entity 'circulate' named entity 'Survey' named entity 'INDICATED' named entity 'DNA-SEQ' named entity 'CHICKENS' named entity 'RNA-SEQ' named entity 'REGION' named entity 'DUCKS' named entity 'RAPID' named entity 'CHICKEN' named entity 'GREATLY' named entity 'INCLUDING' named entity 'IMPORTANT' named entity 'INFECTIOUS BRONCHITIS VIRUS' named entity 'YEARS' named entity 'PIGEONS' named entity 'SURVEY' named entity 'DATA' named entity 'EXPANDED ' named entity 'CIRCULATE' named entity 'PROVIDED' named entity 'NEW' named entity 'NGS' named entity 'POLYMERASE CHAIN REACTION' named entity 'AVIAN' named entity 'IDENTIFICATION' named entity 'DISCOVERY' named entity 'INFECT' named entity 'REGIONS' named entity 'POSITIVES' named entity 'SPECIES' named entity 'IDENTIFIED' named entity 'OTHER THAN' named entity 'SEQUENCES' named entity 'FOWLS' named entity 'DISTRIBUTION' named entity 'HOST' named entity 'VIRUSES' named entity 'HAVE' named entity 'DIVERSITY' named entity 'TOTAL' named entity 'TECHNOLOGIES' named entity 'PCR' named entity 'DUCK' named entity 'CONTROL' named entity 'USING' named entity 'REVERSE-TRANSCRIPTION' named entity 'GENE' named entity 'SUPPORTING' named entity 'COVS' named entity 'VIRAL' named entity 'TAKEN' named entity 'NOVEL' named entity 'IDENTIFICATION' named entity 'WILD' named entity 'SPECIFIC' named entity 'NOVEL' named entity 'NEXT GENERATION SEQUENCING' named entity 'GENUS GAMMACORONAVIRUS' named entity 'TIMELY' named entity 'EMERGING INFECTIOUS DISEASES' named entity 'DUCK CORONAVIRUS' named entity 'INSIGHT' named entity 'PHYLOGENETIC ANALYSIS' named entity 'OUR' named entity 'TARGETING' named entity 'EVOLUTION' named entity 'VIRAL NUCLEOCAPSID' named entity 'RNA-SEQ ' named entity 'RECENT' named entity 'DUCKS' named entity 'AVIAN CORONAVIRUS'

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