About: Genome sequencing and characterization analysis of a Beijing isolate of chicken coronavirus infectious bronchitis virus

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About: Genome sequencing and characterization analysis of a Beijing isolate of chicken coronavirus infectious bronchitis virus Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genome sequencing and characterization analysis of a Beijing isolate of chicken coronavirus infectious bronchitis virus
Creator	Wang, Ming Chen, Chen Zhang, Ying Li, Ning Fuyong, Chen Gong, Yuanshi Hanchun, Yang Jialin, Y Jidong, Feng Qingming, W Qixin, Sun Weiwu, Jin Yiqiang, Zhao Zhangliang, Chen
Source	Medline; PMC
abstract	Avian infectious bronchitis virus (AIBV) is classified as a member of the genus coronavirus in the family coronaviridae. The enveloped virus has a positive-sense, single-stranded RNA genome of approximately 28 kilo-bases, which has a 5′ cap structure and 3′ polyadenylation tract. The complete genome sequence of infectious bronchitis virus (IBV), Beijing isolate, was determined by cloning sequencing and primer walking. The whole genome is 27733 nucleotides in length, has ten open reading frames: 5′ -orf1a-orf1ab-s-3a-3b-e-m-6a-6b-n-3′. Alignments of the genome sequence of IBV Beijing isolate with those of two AIBV strains and one SARS coronavirus were performed respectively. The genome sequence of IBV Beijing isolate compared with that of the IBV strain LX4 (uncompleted, 19440 bp in size) was 91.2% similarity. However, the full-length genome sequence of IBV Beijing isolate was 85.2% identity to that of IBV Strain Beaudette, and was only 50.8% homology to that of SARS coronavirus. The results showed that the genome of IBV has remarkable variation. And IBV Beijing isolate is not closely related to SARS coronavirus. Phylogenetic analyses based on the whole genome sequence, S protein, M protein and N protein, also showed that AIBV Beijing isolate is lone virus in group III and is distant from SARS coronavirus. In conclusion, this study will contribute to the studies of diagnosis and diseases control on IBV in China.
has issue date	2004-01-01(xsd:dateTime)
bibo:doi	10.1360/03wc0347
bibo:pmid	32214717
has license	no-cc
sha1sum (hex)	57b0a65d4333f7345ab716001308e70e3b3df64c
schema:url	https://doi.org/10.1360/03wc0347
resource representing a document's title	Genome sequencing and characterization analysis of a Beijing isolate of chicken coronavirus infectious bronchitis virus
has PubMed Central identifier	PMC7089023
has PubMed identifier	32214717
schema:publication	Chin Sci Bull
resource representing a document's body	covid:57b0a65d4333f7345ab716001308e70e3b3df64c#body_text
is schema:about of	named entity 'genome' named entity 'nucleotides' named entity 'chicken' named entity 'KILO-' named entity 'SEQUENCING' named entity 'NUCLEOTIDES' named entity 'CORONAVIRUS' named entity 'PERFORMED' named entity 'STUDY' named entity 'GENUS' covid:arg/57b0a65d4333f7345ab716001308e70e3b3df64c named entity 'CHARACTERIZATION' named entity 'PROTEIN ' named entity 'SINGLE-STRANDED RNA' named entity 'BASES' named entity 'E-M' named entity 'VIRUS' named entity 'DETERMINED BY' named entity 'ANALYSIS' named entity 'INFECTIOUS BRONCHITIS VIRUS' named entity 'ISOLATE' named entity 'CHICKEN' named entity 'BEIJING' named entity 'GENOME SEQUENCING' named entity 'N PROTEIN' named entity 'DISEASES' named entity 'CONCLUSION' named entity 'RESULTS' named entity 'CONTROL' named entity 'SIMILARITY' named entity 'M-6A' named entity 'CLONING' named entity 'COMPLETE' named entity 'POLYADENYLATION' named entity 'PRIMER WALKING' named entity 'CAP STRUCTURE' named entity 'ISOLATE' named entity 'IDENTITY' named entity 'CORONAVIRUS' named entity 'STRAINS' named entity 'BASED' named entity '19440' named entity 'DIAGNOSIS' named entity 'SIZE' named entity 'INFECTIOUS BRONCHITIS VIRUS' named entity 'S PROTEIN' named entity 'FAMILY CORONAVIRIDAE' named entity 'ORF1AB' named entity 'TRACT' named entity 'MEMBER OF' named entity 'STRAIN' named entity 'CHINA' named entity 'SENSE' named entity 'LENGTH' named entity 'ENVELOPED VIRUS' named entity 'POSITIVE' named entity 'DISTANT FROM' named entity 'HOMOLOGY' named entity 'OPEN READING FRAMES' named entity 'M PROTEIN' named entity 'BEIJING' named entity 'GENOME SEQUENCE' named entity 'SARS CORONAVIRUS' named entity 'APPROXIMATELY' named entity 'GROUP' named entity 'COMPARED' named entity 'STUDIES' named entity 'LONE'

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