About: Analysis of dsDNA and RNA viromes in methanogenic digesters reveals novel viral genetic diversity

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Analysis of dsDNA and RNA viromes in methanogenic digesters reveals novel viral genetic diversity
Creator	Calusinska, Magdalena Delfosse, Philippe Goux, Xavier Lentzen, Esther Marynowska, Martyna
Source	Medline; PMC
abstract	Although viruses are not the key players of the anaerobic digestion process, they may affect the dynamics of bacterial and archaeal populations involved in biogas production. Until now viruses have received very little attention in this specific habitat; therefore, as a first step towards their characterization, we optimized a virus filtration protocol from anaerobic sludge. Afterwards, to assess dsDNA and RNA viral diversity in sludge samples from nine different reactors fed either with waste water, agricultural residues or solid municipal waste plus agro‐food residues, we performed metagenomic analyses. As a result we showed that, while the dsDNA viromes (21 assigned families in total) were dominated by dsDNA phages of the order C audovirales, RNA viruses (14 assigned families in total) were less diverse and were for the main part plant‐infecting viruses. Interestingly, less than 2% of annotated contigs were assigned as putative human and animal pathogens. Our study greatly extends the existing view of viral genetic diversity in methanogenic reactors and shows that these viral assemblages are distinct not only among the reactor types but also from nearly 30 other environments already studied, including the human gut, fermented food, deep sea sediments and other aquatic habitats.
has issue date	2016-01-18(xsd:dateTime)
bibo:doi	10.1111/1462-2920.13127
bibo:pmid	26568175
has license	cc-by-nc-nd
sha1sum (hex)	5167871e60f51a448cf695d781e630b2f24c47a6
schema:url	https://doi.org/10.1111/1462-2920.13127
resource representing a document's title	Analysis of dsDNA and RNA viromes in methanogenic digesters reveals novel viral genetic diversity
has PubMed Central identifier	PMC7163765
has PubMed identifier	26568175
schema:publication	Environ Microbiol
resource representing a document's body	covid:5167871e60f51a448cf695d781e630b2f24c47a6#body_text
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