About: Two novel bocaparvovirus species identified in wild Himalayan marmots

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About: Two novel bocaparvovirus species identified in wild Himalayan marmots Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Two novel bocaparvovirus species identified in wild Himalayan marmots
Creator	Lu, Shan Duan, Zhaojun Jin, Dong Li, Lili Ao, Yuanyun Li, L Li, X Li, Xiaoyue Xie, Xiaolu Yu, Jiemei Lu, D Xie, X Ao, Y
source	Medline; PMC
abstract	Bocaparvovirus (BOV) is a genetically diverse group of DNA viruses and a possible cause of respiratory, enteric, and neurological diseases in humans and animals. Here, two highly divergent BOVs (tentatively named as Himalayan marmot BOV, HMBOV1 and HMBOV2) were identified in the livers and feces of wild Himalayan marmots in China, by viral metagenomic analysis. Five of 300 liver samples from Himalayan marmots were positive for HMBOV1 and five of 99 fecal samples from these animals for HMBOV2. Their nearly complete genome sequences are 4,672 and 4,887 nucleotides long, respectively, with a standard genomic organization and containing protein-coding motifs typical for BOVs. Based on their NS1, NP1, and VP1, HMBOV1 and HMBOV2 are most closely related to porcine BOV SX/1-2 (approximately 77.0%/50.0%, 50.0%/53.0%, and 79.0%/54.0% amino acid identity, respectively). Phylogenetic analysis of these three proteins showed that HMBOV1 and HMBOV2 formed two distinctly independent branches in BOVs. According to these results, HMBOV1 and HMBOV2 are two different novel species in the Bocaparvovirus genus. Their identification expands our knowledge of the genetic diversity and evolution of BOVs. Further studies are needed to investigate their potential pathogenicity and their impact on Himalayan marmots and humans.
has issue date	2017-12-05(xsd:dateTime)
bibo:doi	10.1007/s11427-017-9231-4
bibo:pmid	29218438
has license	no-cc
sha1sum (hex)	4b802901270fa1f6865899ec8b02066f37c176c8
schema:url	https://doi.org/10.1007/s11427-017-9231-4
resource representing a document's title	Two novel bocaparvovirus species identified in wild Himalayan marmots
has PubMed Central identifier	PMC7089499
has PubMed identifier	29218438
schema:publication	Sci China Life Sci
resource representing a document's body	covid:4b802901270fa1f6865899ec8b02066f37c176c8#body_text
is schema:about of	named entity 'livers' named entity 'potential' named entity 'long' named entity 'BOCAPARVOVIRUS' named entity 'EVOLUTION' named entity 'HUMANS' named entity 'PATHOGENICITY' named entity 'RESULTS' named entity 'WILD' named entity 'KNOWLEDGE' named entity 'GROUP' named entity 'GENOME' named entity '300' named entity 'BRANCHES' named entity 'COMPLETE' named entity 'OUR' named entity 'NS1' named entity 'VIRAL' named entity 'NP1' named entity 'STANDARD' named entity 'TYPICAL' named entity 'MOTIFS' named entity 'ACCORDING' named entity 'PHYLOGENETIC ANALYSIS' named entity 'SAMPLES' named entity 'POTENTIAL' named entity 'STUDIES' named entity 'NEARLY' named entity 'PORCINE' named entity 'BOCAPARVOVIRUS' named entity 'MARMOTS' named entity 'PROTEIN-CODING' named entity 'PROTEINS' named entity 'CAUSE' named entity 'GENUS' named entity 'VP1' named entity 'SEQUENCES' named entity 'POSSIBLE' named entity 'HERE' named entity '2F1' named entity 'MARMOT' named entity 'NEEDED' named entity 'ANALYSIS' named entity 'TO INVESTIGATE' named entity 'FORMED' named entity 'IDENTITY' named entity 'NOVEL' named entity 'ENTERIC' named entity 'RESPIRATORY' named entity 'AMINO ACID' named entity 'NAMED' named entity 'POSITIVE FOR' named entity 'NOVEL' named entity 'NUCLEOTIDES' named entity 'IMPACT' named entity 'CHINA' named entity 'CONTAINING' named entity 'GENOMIC' named entity 'FECES' named entity 'IDENTIFIED' named entity 'LONG' named entity 'FECAL' named entity 'INDEPENDENT' named entity 'ORGANIZATION' named entity 'DIVERSE' named entity 'LIVERS' named entity 'DNA VIRUSES' named entity 'RELATED' named entity 'IDENTIFIED'

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