About: Virome of crab-eating (Cerdocyon thous) and pampas foxes (Lycalopex gymnocercus) from southern Brazil and Uruguay

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About: Virome of crab-eating (Cerdocyon thous) and pampas foxes (Lycalopex gymnocercus) from southern Brazil and Uruguay Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Virome of crab-eating (Cerdocyon thous) and pampas foxes (Lycalopex gymnocercus) from southern Brazil and Uruguay
Creator	Da Silva, R Weber, M Baumbach, J Baumbach, L Budaszewski, L Budaszewski, R Canal, Canal, C Canova, C Canova, R Da Silva, M De Lorenzo, C De Lorenzo, J De Oliveira, C De Oliveira, L Finamor, Desidério Gonçalves, Av Mayer, F Mayer, L Mosena, A Olegário, J Olegário, R Soares, J Soares, L Sonne, A Sonne, L Varela, A Varela, F Veterinárias, Pesquisas
Source	Elsevier; Medline; PMC
abstract	Crab-eating (Cerdocyon thous) and Pampas foxes (Lycalopex gymnocercus) are wild canids distributed in South America. Domestic dogs (Canis lupus familiaris) and wild canids may share viral pathogens, including rabies virus (RABV), canine distemper virus (CDV), and canine parvovirus 2 (CPV-2). To characterize the virome of these wild canid species, the present work evaluated the spleen and mesenteric lymph node virome of 17 crab-eating and five Pampas foxes using high-throughput sequencing (HTS). Organ samples were pooled and sequenced using an Illumina MiSeq platform. Additional PCR analyses were performed to identify the frequencies and host origin for each virus detected by HTS. Sequences more closely related to the Paramyxoviridae, Parvoviridae and Anelloviridae families were detected, as well as circular Rep-encoding single-stranded (CRESS) DNA viruses. CDV was found only in crab-eating foxes, whereas CPV-2 was found in both canid species; both viruses were closely related to sequences reported in domestic dogs from southern Brazil. Moreover, the present work reported the detection of canine bocavirus (CBoV) strains that were genetically divergent from CBoV-1 and 2 lineages. Finally, we also characterized CRESS DNA viruses and anelloviruses with marked diversity. The results of this study contribute to the body of knowledge regarding wild canid viruses that can potentially be shared with domestic canids or other species.
has issue date	2020-06-21(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2020.104421
bibo:pmid	32580027
has license	no-cc
sha1sum (hex)	419e82486719ec5f98e35527323b8ef7e7f55baf
schema:url	https://doi.org/10.1016/j.meegid.2020.104421
resource representing a document's title	Virome of crab-eating (Cerdocyon thous) and pampas foxes (Lycalopex gymnocercus) from southern Brazil and Uruguay
has PubMed Central identifier	PMC7306396
has PubMed identifier	32580027
schema:publication	Infect Genet Evol
resource representing a document's body	covid:419e82486719ec5f98e35527323b8ef7e7f55baf#body_text
is schema:about of	named entity 'body' named entity 'domestic dogs' named entity 'dogs' named entity 'CPV' named entity 'Canis' named entity 'Brazil' named entity 'canids' named entity 'marked' named entity 'study' named entity 'domestic' named entity 'South America' named entity 'lymph node' named entity 'anelloviruses' named entity 'sequenced' named entity 'genetically divergent' named entity 'virome' named entity 'canid species' named entity 'DNA viruses' named entity 'bocavirus' named entity 'canine' named entity 'canid' named entity 'South America' named entity 'Crab-eating' named entity 'Pampas' named entity 'pampas' named entity 'crab-eating' named entity 'Brazil' named entity 'HTS' named entity 'genomes' named entity 'pathogenicity' named entity 'genome' named entity 'Genome' named entity 'crab' named entity 'spleens' named entity 'South America' named entity 'carnivore' named entity 'CDV' named entity 'domestic dogs' named entity 'hemagglutinin' named entity 'DNA library' named entity 'HTS' named entity 'common ancestor' named entity 'genomes' named entity 'viruses' named entity 'nucleotide' named entity 'crab' named entity 'Lycalopex' named entity 'domestic dogs' named entity 'single-stranded' named entity 'Brazil' named entity 'nucleotide' named entity 'canid' named entity 'ssRNA'

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