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About:
Dynamic causal modelling of COVID-19
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covidontheweb.inria.fr
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type
Academic Article
research paper
schema:ScholarlyArticle
isDefinedBy
Covid-on-the-Web dataset
title
Dynamic causal modelling of COVID-19
Creator
Chowell, Gerardo
Hellewell, Joel
Billig, Alexander
Daunizeau, Jean
Flandin, Guillaume
Friston, Karl
Lambert, Christian
Litvak, Vladimir
Moran, Rosalyn
Parr, Thomas
Price, Cathy
Razi, Adeel
Zeidman, Peter
Hulme, Ollie
source
PMC
abstract
This technical report describes a dynamic causal model of the spread of coronavirus through a population. The model is based upon ensemble or population dynamics that generate outcomes, like new cases and deaths over time. The purpose of this model is to quantify the uncertainty that attends predictions of relevant outcomes. By assuming suitable conditional dependencies, one can model the effects of interventions (e.g., social distancing) and differences among populations (e.g., herd immunity) to predict what might happen in different circumstances. Technically, this model leverages state-of-the-art variational (Bayesian) model inversion and comparison procedures, originally developed to characterise the responses of neuronal ensembles to perturbations. Here, this modelling is applied to epidemiological populations—to illustrate the kind of inferences that are supported and how the model per se can be optimised given timeseries data. Although the purpose of this paper is to describe a modelling protocol, the results illustrate some interesting perspectives on the current pandemic; for example, the nonlinear effects of herd immunity that speak to a self-organised mitigation process.
has issue date
2020-08-07
(
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bibo:doi
10.12688/wellcomeopenres.15881.2
has license
cc-by
sha1sum (hex)
326656d846ef1d598c6fcb48119faf42e577e2f1
schema:url
https://doi.org/10.12688/wellcomeopenres.15881.2
resource representing a document's title
Dynamic causal modelling of COVID-19
has PubMed Central identifier
PMC7431977
schema:publication
Wellcome Open Res
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covid:326656d846ef1d598c6fcb48119faf42e577e2f1#body_text
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