About: ViPR: an open bioinformatics database and analysis resource for virology research

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About: ViPR: an open bioinformatics database and analysis resource for virology research Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	ViPR: an open bioinformatics database and analysis resource for virology research
Creator	Zhang, Yun Kumar, Sanjeev Dietrich, Jonathan Gu, Zhiping Hunt, Victoria Liu, Mengya Zaremba, Sam Zhou, Liwei Klem, Edward Pickett, Brett Scheuermann, Richard Larson, Christopher Noronha, Jyothi Sadat, Eva Squires, R
Source	Medline; PMC
abstract	The Virus Pathogen Database and Analysis Resource (ViPR, www.ViPRbrc.org) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Centers (BRC) program. ViPR contains information for human pathogenic viruses belonging to the Arenaviridae, Bunyaviridae, Caliciviridae, Coronaviridae, Flaviviridae, Filoviridae, Hepeviridae, Herpesviridae, Paramyxoviridae, Picornaviridae, Poxviridae, Reoviridae, Rhabdoviridae and Togaviridae families, with plans to support additional virus families in the future. ViPR captures various types of information, including sequence records, gene and protein annotations, 3D protein structures, immune epitope locations, clinical and surveillance metadata and novel data derived from comparative genomics analysis. Analytical and visualization tools for metadata-driven statistical sequence analysis, multiple sequence alignment, phylogenetic tree construction, BLAST comparison and sequence variation determination are also provided. Data filtering and analysis workflows can be combined and the results saved in personal ‘Workbenches’ for future use. ViPR tools and data are available without charge as a service to the virology research community to help facilitate the development of diagnostics, prophylactics and therapeutics for priority pathogens and other viruses.
has issue date	2011-10-17(xsd:dateTime)
bibo:doi	10.1093/nar/gkr859
bibo:pmid	22006842
has license	cc-by-nc
sha1sum (hex)	14b07f164039eddabc4f3932a873bcbccb2108f4
schema:url	https://doi.org/10.1093/nar/gkr859
resource representing a document's title	ViPR: an open bioinformatics database and analysis resource for virology research
has PubMed Central identifier	PMC3245011
has PubMed identifier	22006842
schema:publication	Nucleic Acids Res
resource representing a document's body	covid:14b07f164039eddabc4f3932a873bcbccb2108f4#body_text
is schema:about of	named entity 'HEPEVIRIDAE' named entity 'DEVELOPMENT' named entity 'REOVIRIDAE' named entity 'SEQUENCE VARIATION' named entity 'PERSONAL' named entity 'DATABASE' named entity 'PROTEIN STRUCTURES' named entity 'RESOURCE' named entity 'PATHOGENS' named entity 'ORG' named entity 'IMMUNE' named entity 'TO HELP' named entity 'COMPARATIVE GENOMICS' named entity 'REPOSITORY' named entity 'SUPPORTED' named entity 'PATHOGENIC' named entity 'DATA' named entity 'FUTURE' named entity 'ANALYSIS' named entity 'TOGAVIRIDAE' named entity 'NOVEL' named entity 'TYPES' named entity 'DATA FILTERING' named entity 'COMPARISON' named entity 'COMBINED' named entity 'GENE' named entity 'AVAILABLE' named entity 'RESULTS' named entity 'sequence' named entity 'Bunyaviridae' named entity 'Herpesviridae' named entity 'types' named entity 'prophylactics' named entity 'Filoviridae' named entity 'open' named entity 'INFORMATION' named entity 'METADATA' named entity 'EPITOPE' named entity 'SEQUENCE ANALYSIS' named entity 'RESEARCH' named entity 'PRIORITY' named entity 'TO SUPPORT' named entity 'CENTERS' named entity 'ANALYTICAL' named entity 'PROVIDED' named entity 'RESOURCE' named entity 'BIOINFORMATICS' named entity 'OPEN' named entity 'VIROLOGY' named entity 'ARENAVIRIDAE' named entity 'VISUALIZATION' named entity 'CORONAVIRIDAE' named entity 'VIRUSES' named entity 'POXVIRIDAE' named entity 'CONTAINS' named entity 'BUNYAVIRIDAE' named entity 'BLAST' named entity 'CHARGE' named entity 'FILOVIRIDAE' named entity 'VARIOUS' named entity 'FLAVIVIRIDAE' named entity 'VIRUS' named entity 'FAMILIES' named entity 'SEQUENCE' named entity 'PROGRAM' named entity 'HUMAN' named entity 'PARAMYXOVIRIDAE'

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