About: Assessing the role of live poultry trade in community-structured transmission of avian influenza in China

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Assessing the role of live poultry trade in community-structured transmission of avian influenza in China
Creator	Qi, Wenbao Lemey, Philippe Liu, Di Tian, Huaiyu Yang, Qiqi Bi, Yuhai Shi, Weifeng Zhao, Xiang Pybus, Oliver Stenseth, Nils Suchard, Marc Zhang, Guogang
Source	Medline; PMC
abstract	The live poultry trade is thought to play an important role in the spread and maintenance of highly pathogenic avian influenza A viruses (HP AIVs) in Asia. Despite an abundance of small-scale observational studies, the role of the poultry trade in disseminating AIV over large geographic areas is still unclear, especially for developing countries with complex poultry production systems. Here we combine virus genomes and reconstructed poultry transportation data to measure and compare the spatial spread in China of three key subtypes of AIV: H5N1, H7N9, and H5N6. Although it is difficult to disentangle the contribution of confounding factors, such as bird migration and spatial distance, we find evidence that the dissemination of these subtypes among domestic poultry is geographically continuous and likely associated with the intensity of the live poultry trade in China. Using two independent data sources and network analysis methods, we report a regional-scale community structure in China that might explain the spread of AIV subtypes in the country. The identification of this structure has the potential to inform more targeted strategies for the prevention and control of AIV in China.
has issue date	2020-03-17(xsd:dateTime)
bibo:doi	10.1073/pnas.1906954117
bibo:pmid	32123088
has license	cc-by
sha1sum (hex)	0f0bbda51be06c5872606d245c145bfffb3971e4
schema:url	https://doi.org/10.1073/pnas.1906954117
resource representing a document's title	Assessing the role of live poultry trade in community-structured transmission of avian influenza in China
has PubMed Central identifier	PMC7084072
has PubMed identifier	32123088
schema:publication	Proc Natl Acad Sci U S A
resource representing a document's body	covid:0f0bbda51be06c5872606d245c145bfffb3971e4#body_text
is schema:about of	named entity 'China' named entity 'avian influenza' named entity 'Jilin' named entity 'China' named entity 'virus transmission' named entity 'H5N6' named entity 'China' named entity 'phylogeography' named entity 'poultry' named entity 'generalized linear model' named entity 'gene' named entity 'H5N6' named entity '0.98' named entity 'viruses' named entity 'poultry' named entity 'H5N1' named entity 'highly pathogenic avian influenza' named entity 'H5N6' named entity 'virus' named entity 'poultry' named entity 'poultry' named entity 'Qinghai' named entity 'Vietnam' named entity 'hemagglutinin' named entity 'virus' named entity 'H5N6' named entity 'H7N9' named entity 'domestic poultry' named entity 'convenience sampling' named entity 'poultry' named entity 'population density' named entity 'poultry' named entity 'genome' named entity 'H5N1' named entity 'poultry' named entity 'H5N1' named entity 'H5N6' named entity 'Pearl River Delta' named entity 'phylogenies' named entity 'poultry' named entity 'domestic poultry' named entity 'H5N1' named entity 'phylogeographic' named entity 'domestic poultry' named entity 'H5N1' named entity 'China' named entity 'clades' named entity 'poultry' named entity 'waterfowl' named entity 'poultry' named entity 'clades' named entity 'H7N9' named entity 'poultry' named entity 'China' named entity 'China' named entity 'public health' named entity 'poultry' named entity 'interspecies transmission' named entity 'prevention and control' named entity 'virus' named entity 'waterfowl' named entity 'phylogenetic' named entity 'epidemic' named entity 'H5N6' named entity 'poultry' named entity 'H5N1' named entity 'virus' named entity 'phylogeographic' named entity 'China' named entity 'Yangtze River Delta'

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