About: Object-oriented biological system integration: a SARS coronavirus example

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Object-oriented biological system integration: a SARS coronavirus example
Creator	Shegogue, Daniel Zheng, W
Source	Medline; PMC
abstract	Motivation: The importance of studying biology at the system level has been well recognized, yet there is no well-defined process or consistent methodology to integrate and represent biological information at this level. To overcome this hurdle, a blending of disciplines such as computer science and biology is necessary. Results: By applying an adapted, sequential software engineering process, a complex biological system (severe acquired respiratory syndrome-coronavirus viral infection) has been reverse-engineered and represented as an object-oriented software system. The scalability of this object-oriented software engineering approach indicates that we can apply this technology for the integration of large complex biological systems. Availability: A navigable web-based version of the system is freely available at http://people.musc.edu/~zhengw/SARS/Software-Process.htm Contact: zhengw@musc.edu Supplementary information: Supplemental data: Table 1 and Figures 1–16.
has issue date	2005-05-15(xsd:dateTime)
bibo:doi	10.1093/bioinformatics/bti344
bibo:pmid	15731211
has license	no-cc
sha1sum (hex)	0ead8ba70e74385a1b6523b4775c356c6b884701
schema:url	https://doi.org/10.1093/bioinformatics/bti344
resource representing a document's title	Object-oriented biological system integration: a SARS coronavirus example
has PubMed Central identifier	PMC7197705
has PubMed identifier	15731211
schema:publication	Bioinformatics
resource representing a document's body	covid:0ead8ba70e74385a1b6523b4775c356c6b884701#body_text
is schema:about of	named entity 'methodology' named entity 'computer science' named entity 'SYSTEMS' named entity 'CONSISTENT' named entity 'VERSION' named entity 'SOFTWARE ENGINEERING' named entity 'APPROACH' named entity 'REVERSE' named entity 'system' named entity 'navigable' named entity 'biological system' named entity 'version' named entity 'scalability' named entity 'object-oriented software' named entity 'object-oriented software engineering' named entity 'Object-oriented' named entity 'sequence of events' named entity 'class diagram' named entity 'software systems' named entity 'protein' named entity 'UML' named entity 'UML' named entity 'object-oriented software development' named entity 'high-level' named entity 'Unified Modeling Language' named entity 'software engineering' named entity 'mRNAs' named entity 'Rottier' named entity 'object-oriented model' named entity 'UML' named entity 'mathematical models' named entity 'object-oriented' named entity 'object-oriented' named entity 'sequence diagram' named entity 'object-oriented analysis and design' named entity 'SARS' named entity 'dynamic relationships' named entity 'Reverse engineering' named entity 'layered structure' named entity 'object-oriented' named entity 'SARS' named entity 'viral infection' named entity 'UML' named entity 'conceptual model' named entity 'reverse-engineered' named entity 'class diagrams' named entity 'Web-based' named entity 'gene' named entity 'Accelrys' named entity 'viral infection' named entity 'information integration' named entity 'state diagram' named entity 'cell fusion' named entity 'RNA replication' named entity 'CRC card' named entity 'sequence diagram' named entity 'UML' named entity 'waterfall model' named entity 'web portal' named entity 'nucleocapsid' named entity 'class diagram' named entity 'layered structure' named entity 'protein' named entity 'Microsoft Visio Pro' named entity 'conformational change' named entity 'viral protein' named entity 'sequence diagram' named entity 'object-oriented software' named entity 'viral infection' named entity 'object-oriented software' named entity 'sequence diagram' named entity 'fusion peptide' named entity 'object function' named entity 'class diagram' named entity 'structural analysis' named entity 'software engineers' named entity 'cell membrane' named entity 'SARS' named entity 'object-oriented approach' named entity 'markup language'

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