About: Genetic characterization of the spike gene of porcine epidemic diarrhea viruses (PEDVs) circulating in Vietnam from 2015 to 2016

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Genetic characterization of the spike gene of porcine epidemic diarrhea viruses (PEDVs) circulating in Vietnam from 2015 to 2016 Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Genetic characterization of the spike gene of porcine epidemic diarrhea viruses (PEDVs) circulating in Vietnam from 2015 to 2016
Creator	Song, Daesub Choe, Se-Eun An, Cha, Ra Mai, Thi Nguyen, Thi Bui, Thi Van, \| Vu, Thi Do, Tien Dong-Jun, \| Le, P Than, Van
topic	covid:02d0ce9f28d04f69024ffbace2a931a05cb44555#this
source	PMC
abstract	BACKGROUND: Porcine epidemic diarrhea (PED) is a highly contagious swine disease caused by the PED virus (PEDV), which is a member of the family Coronaviridae. Since the first outbreaks in Belgium and the United Kingdom were reported in 1971, PED has spread throughout many countries around the world and causing significant economic loss. This study was conducted to investigate the recent distribution of PEDV strains in Vietnam during the 2015–2016 seasons. METHODS: A total of 30 PED‐specific PCR‐positive intestinal and faecal samples were collected from unvaccinated piglets in Vietnam during the 2015–2016 seasons. The full length of the spike (S) gene of these PEDV strains were analysed to determine their phylogeny and genetic relationship with other available PEDV strains globally. RESULTS: Phylogenetic analysis of the complete S gene sequences revealed that the 28 Vietnamese PEDV strains collected in the northern and central regions clustered in the G2 group (both G2a and G2b sub‐groups), while the other 2 PEDV strains (HUA‐PED176 and HUA‐PED254) collected in the southern region were clustered in the G1/G1b group/sub‐group. The nucleotide (nt) and deduced amino acid (aa) analyses based on the complete S gene sequences showed that the Vietnamese PEDV strains were closely related to each other, sharing nt and aa homology of 93.2%–99.9% and 92.6%–99.9%, respectively. The N‐glycosylation patterns and mutations in the antigenic region were observed in Vietnamese PEDV strains. CONCLUSIONS: This study provides, for the first time, up‐to‐date information on viral circulation and genetic distribution, as well as evidence to assist in the development of effective PEDV vaccines in Vietnam.
has issue date	2020-03-11(xsd:dateTime)
bibo:doi	10.1002/vms3.256
bibo:pmid	32159913
has license	cc-by-nc-nd
sha1sum (hex)	02d0ce9f28d04f69024ffbace2a931a05cb44555
schema:url	https://doi.org/10.1002/vms3.256
resource representing a document's title	Genetic characterization of the spike gene of porcine epidemic diarrhea viruses (PEDVs) circulating in Vietnam from 2015 to 2016
has PubMed Central identifier	PMC7397879
has PubMed identifier	32159913
schema:publication	Vet Med Sci
resource representing a document's body	covid:02d0ce9f28d04f69024ffbace2a931a05cb44555#body_text
is http://vocab.deri.ie/void#inDataset of	proxy:http/ns.inria.fr/covid19/02d0ce9f28d04f69024ffbace2a931a05cb44555
is schema:about of	named entity 'strains' named entity 'group' named entity 'circulation' named entity 'original' named entity 'time' named entity 'full' named entity 'Background' named entity 'viral' named entity 'properly' named entity 'complete' named entity 'genetic' named entity 'glycoprotein' named entity 'Vietnam' named entity 'PORCINE EPIDEMIC DIARRHEA VIRUS' named entity 'FAECAL' named entity 'PHYLOGENY' named entity 'VIETNAMESE' named entity 'LENGTH' named entity '28S' named entity 'CIRCULATION' named entity 'INTESTINAL' named entity 'SUB-' named entity 'VIRUS' named entity 'REGIONS' named entity 'OTHER 2' named entity 'PROVIDES' named entity 'RELATIONSHIP' named entity 'RECENT' named entity 'HOMOLOGY' named entity 'globally' named entity 'based' named entity 'region' named entity 'antigenic' named entity 'phylogenetic analysis' named entity 'gene' named entity 'strains' named entity 'Vietnamese' named entity 'Phylogenetic analysis' named entity 'homology' named entity 'conducted' named entity 'family' named entity 'spike' named entity 'Porcine' named entity 'circulating' named entity 'gene' named entity 'gene' named entity 'phylogeny' named entity 'gene sequences' named entity 'PEDV' named entity 'PEDV' named entity 'phylogenetic analysis' named entity 'vaccines' named entity 'PEDV' named entity 'porcine epidemic diarrhea virus' named entity 'highly contagious' named entity 'highly contagious' named entity 'sequenced' named entity 'United States' named entity 'PCR' named entity 'Korea' named entity 'virion' named entity 'Hung Yen' named entity 'PEDV' named entity 'Promega' named entity 'Qiagen' named entity 'phylogenetic tree' named entity 'complete sequences'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2025 OpenLink Software