About: Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits

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An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits
Creator	Ball, Jonathan Shi, Mang Bennett, Malcolm Tsoleridis, Theocharis Monchatre-Leroy, Elodie Umhang, Gérald Holmes, Edward Tarlinton, Rachael Chappell, Joseph Mcclure, C
source	Medline; PMC
abstract	The advent of unbiased metagenomic virus discovery has revolutionized studies of virus biodiversity and evolution. Despite this, our knowledge of the virosphere, including in mammalian species, remains limited. We used unbiased metagenomic sequencing to identify RNA viruses in European field voles and rabbits. Accordingly, we identified a number of novel RNA viruses including astrovirus, rotavirus A, picorna-like virus and a narmovirus (paramyxovirus). In addition, we identified a sobemovirus and a novel luteovirus that likely originated from the rabbit diet. These newly discovered viruses were often divergent from those previously described. The novel astrovirus was most closely related to a virus sampled from the rodent-eating European roller bird (Coracias garrulous). PCR screening revealed that the novel narmovirus in the UK field vole had a prevalence of approximately 4%, and shared common ancestry with other rodent narmoviruses sampled globally. Two novel rotavirus A sequences were detected in a UK field vole and a French rabbit, the latter with a prevalence of 5%. Finally, a highly divergent picorna-like virus found in the gut of the French rabbit virus was only ~35% similar to an arilivirus at the amino acid level, suggesting the presence of a novel viral genus within the Picornaviridae.
has issue date	2019-12-31(xsd:dateTime)
bibo:doi	10.3390/v12010047
bibo:pmid	31906044
has license	cc-by
sha1sum (hex)	ce248b901191d45f3e56f1e6664a0239738aa148
schema:url	https://doi.org/10.3390/v12010047
resource representing a document's title	Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits
has PubMed Central identifier	PMC7019641
has PubMed identifier	31906044
schema:publication	Viruses
resource representing a document's body	covid:ce248b901191d45f3e56f1e6664a0239738aa148#body_text
is schema:about of	named entity 'PCR' named entity 'BIODIVERSITY' named entity 'HIGHLY' named entity 'DETECTED' named entity 'BIRD' named entity 'COMMON' named entity 'VIRUSES' named entity 'THE GUT' named entity 'FIELD VOLE' named entity 'TO IDENTIFY' named entity 'IDENTIFIED' named entity 'SCREENING' named entity 'RODENT' named entity 'PREVALENCE' named entity 'VOLES' named entity 'THESE' named entity 'SEQUENCES' named entity 'STUDIES' named entity 'PRESENCE OF' named entity 'NEWLY DISCOVERED' named entity 'SHARED' named entity 'RNA VIRUSES' named entity 'RABBITS' named entity 'FIELD' named entity 'The advent' named entity 'RNA' named entity 'voles' named entity 'picorna-like' named entity 'unbiased' named entity 'virus' named entity 'virus' named entity 'virus' named entity 'sequencing' named entity 'EATING' named entity 'GENUS' named entity 'INCLUDING' named entity 'SAMPLED' named entity 'EUROPEAN ROLLER' named entity 'NUMBER OF' named entity 'VIRUS' named entity 'RABBIT' named entity 'KNOWLEDGE' named entity 'METAGENOMIC SEQUENCING' named entity 'APPROXIMATELY' named entity 'FOUND' named entity 'REVEALED' named entity 'ADDITION' named entity 'OUR' named entity 'MAMMALIAN' named entity 'NOVEL' named entity 'RELATED' named entity 'PICORNAVIRIDAE' named entity 'VIRAL' named entity 'SOBEMOVIRUS' named entity 'DISCOVERY' named entity 'PREVIOUSLY' named entity 'VOLES' named entity 'RNA VIRUSES' named entity 'RABBITS' named entity 'PREVALENCE' named entity 'DISCOVERY' named entity 'EUROPEAN' named entity 'USED' named entity 'AMINO ACID LEVEL' named entity 'ROTAVIRUS A' named entity 'EUROPEAN' named entity 'ASTROVIRUS' named entity 'NARMOVIRUS' named entity 'SPECIES' named entity 'DESCRIBED' named entity 'PICORNA-LIKE VIRUS' named entity 'FRENCH'

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