About: Genome analysis of a G9P[23] group A rotavirus isolated from a dog with diarrhea in China

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About: Genome analysis of a G9P[23] group A rotavirus isolated from a dog with diarrhea in China Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genome analysis of a G9P[23] group A rotavirus isolated from a dog with diarrhea in China
Creator	Tang, Cheng Yue, Hua Feng, Fan Kan, Ruici Yan, Nan
Source	Elsevier; Medline; PMC
abstract	Genotype G9 is an emerging genotype among species A rotavirus (RVA) circulating in humans and pigs worldwide. In this study, an RVA strain designated RVA/Dog-tc/CHN/SCCD-A/2017/G9P[23] was isolated in cell culture from a pet dog stool sample with acute diarrhea, and its whole genome was sequenced. The genotype constellation of SCCD-A was G9-P[23]-I5-R1-C1-M1-A8-N1-T1-E1-H1. All genome segments except the VP1 gene were closely related to the genes from porcine RVA strains or porcine-like human RVA strains. On the other hand, the VP1 gene clustered in a distinct lineage only with that of a G5P[6] porcine-like human RVA, preventing the identification of the exact host species origin, but very unlikely to be originated from human RVA. In addition, phylogenetic analysis showed that the G9 VP7 gene of SCCD-A clustered into a novel sublineage within the lineage III of G9. This first isolation of a G9P[23] RVA from a pet dog may justify the exploration of the role dogs play in the interaction of RVA circulating in pigs and humans.
has issue date	2019-02-20(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2019.02.020
bibo:pmid	30796978
has license	no-cc
sha1sum (hex)	b2dfd8ff2d92fc7749498e8af2cc16b831dc8090
schema:url	https://doi.org/10.1016/j.meegid.2019.02.020
resource representing a document's title	Genome analysis of a G9P[23] group A rotavirus isolated from a dog with diarrhea in China
has PubMed Central identifier	PMC7106249
has PubMed identifier	30796978
schema:publication	Infect Genet Evol
resource representing a document's body	covid:b2dfd8ff2d92fc7749498e8af2cc16b831dc8090#body_text
is schema:about of	named entity 'human' named entity '2017' named entity 'isolation' named entity 'humans' named entity 'dog' named entity 'GROUP A ROTAVIRUS' named entity 'CHINA' named entity 'BUT' named entity 'HUMANS' named entity 'EXACT' named entity 'WHOLE GENOME' named entity 'CIRCULATING' named entity 'DISTINCT' named entity 'GENOME' named entity 'DOGS' named entity 'PIGS' named entity 'ROLE' named entity 'PORCINE' named entity 'STRAIN' named entity 'STUDY' named entity 'HUMAN' named entity 'PET' named entity 'GENE' named entity 'GENES' named entity 'PHYLOGENETIC ANALYSIS' named entity 'WORLDWIDE' named entity 'VERY UNLIKELY' named entity 'ITS' named entity 'LIKE' named entity 'PLAY' named entity 'LINEAGE' named entity 'PREVENTING' named entity 'CLUSTERED' named entity 'GENOTYPE' named entity 'RELATED' named entity 'ORIGIN' named entity 'ROTAVIRUS' named entity 'HAND' named entity 'DESIGNATED' named entity 'IDENTIFICATION' named entity 'SEGMENTS' named entity 'G9P' named entity 'DIARRHEA' named entity 'ISOLATED' named entity 'III' named entity 'STOOL SAMPLE' named entity 'CELL CULTURE' named entity 'GENOME ANALYSIS' named entity 'ADDITION' named entity 'DOG' named entity 'ACUTE DIARRHEA' named entity 'EXCEPT' named entity 'SCCD' named entity 'G9P' named entity 'NOVEL' named entity 'ISOLATED' named entity 'DOG' named entity 'EXPLORATION' named entity 'HOST SPECIES' named entity 'JUSTIFY' named entity 'VP7' named entity 'SPECIES' named entity 'ISOLATION' named entity 'STRAINS' named entity 'INTERACTION' named entity 'VP1' covid:arg/b2dfd8ff2d92fc7749498e8af2cc16b831dc8090 named entity 'clustered' named entity 'circulating' named entity 'isolated' named entity 'human' named entity 'strains' named entity 'VP1' named entity 'porcine' named entity 'gene' named entity 'genome' named entity 'gene'

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