About: Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices
Creator	Perez-Bello, Alcides Uriarte, Eugenio Gonzá Lez-Díaz, Humberto Munteanu, Cristian Ubeira, Florencio Lopes, Alexandre Magalhães, De
source	Elsevier; Medline; PMC
abstract	Abstract The importance of the promoter sequences in the function regulation of several important mycobacterial pathogens creates the necessity to design simple and fast theoretical models that can predict them. This work proposes two DNA promoter QSAR models based on pseudo-folding lattice network (LN) and star-graphs (SG) topological indices. In addition, a comparative study with the previous RNA electrostatic parameters of thermodynamically-driven secondary structure folding representations has been carried out. The best model of this work was obtained with only two LN stochastic electrostatic potentials and it is characterized by accuracy, selectivity and specificity of 90.87%, 82.96% and 92.95%, respectively. In addition, we pointed out the SG result dependence on the DNA sequence codification and we proposed a QSAR model based on codons and only three SG spectral moments.
has issue date	2009-02-07(xsd:dateTime)
bibo:doi	10.1016/j.jtbi.2008.09.035
bibo:pmid	18992259
has license	els-covid
sha1sum (hex)	30b575b5a0ee0c129c3d84bc8540dd505a502e6e
schema:url	https://doi.org/10.1016/j.jtbi.2008.09.035
resource representing a document's title	Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices
has PubMed Central identifier	PMC7126577
has PubMed identifier	18992259
schema:publication	Journal of Theoretical Biology
resource representing a document's body	covid:30b575b5a0ee0c129c3d84bc8540dd505a502e6e#body_text
is schema:about of	named entity 'spectral' named entity 'RNA' named entity 'electrostatic' named entity 'function' named entity 'predict' named entity 'models' named entity 'DNA' named entity 'lattice network' named entity 'LATTICE' named entity 'PREVIOUS' named entity 'QSAR MODELS' named entity 'ADDITION' covid:arg/30b575b5a0ee0c129c3d84bc8540dd505a502e6e named entity 'PSEUDO' named entity 'GRAPH' named entity 'SIMPLE' named entity 'SPECIFICITY' named entity 'INDICES' named entity 'RNA' named entity 'CARRIED' named entity 'FUNCTION' named entity 'BEST' named entity 'DNA' named entity 'STAR' named entity 'RESULT' named entity 'DESIGN' named entity 'BASED' named entity 'ELECTROSTATIC' named entity 'PREDICT' named entity 'IMPORTANT' named entity 'ACCURACY' named entity 'STAR' named entity 'MYCOBACTERIAL' named entity 'REGULATION' named entity 'PROMOTER' named entity 'SPECTRAL' named entity 'PREDICTION' named entity 'ALIGNMENT' named entity 'FREE' named entity 'CODONS' named entity 'THEORETICAL MODELS' named entity 'PATHOGENS' named entity 'FAST' named entity 'PROMOTERS' named entity 'NETWORK' named entity 'DNA' named entity 'INDICES' named entity 'NECESSITY' named entity 'SELECTIVITY' named entity 'STOCHASTIC' named entity 'COMPARATIVE STUDY' named entity 'WORK' named entity 'CHARACTERIZED' named entity 'NETWORK' named entity 'POTENTIALS' named entity 'POINTED' named entity 'BASED' named entity 'DRIVEN' named entity 'SECONDARY STRUCTURE' named entity 'DNA SEQUENCE' named entity 'MODEL OF' named entity 'MYCOBACTERIAL' named entity 'FOLDING' named entity 'PROPOSED' named entity 'DEPENDENCE ON' named entity 'SEQUENCES' named entity 'PARAMETERS' named entity 'GRAPHS' named entity 'PSEUDO' named entity 'FOLDING' named entity 'LATTICE' named entity 'OBTAINED' named entity 'addition' named entity 'QSAR' named entity 'mycobacterial'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2025 OpenLink Software