About: Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology

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About: Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : covidontheweb.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology
Creator	Amzazi, Saaid Nejjari, Chakib Allam, Loubna Alouane, Tarek Belyamani, Lahcen Benrahma, Houda Chemao-Elfihri, M Diawara, Idrissa Essabbar, Abdelomunim Hafidi, Naima Ibrahimi, Azeddine Jaoudi, Rachid Karra, Mohammed Kartti, Souad Laamarti, Meriem Laamarti, Rokia Mentag, Rachid Ouadghiri, Mouna Rahoui, Jalila Sbabou, Laila Siah, Samir Smyej, Imane
Source	Medline; PMC
abstract	Here, we report the draft genome sequences of six severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strains. SARS-CoV-2 is responsible for the COVID-19 pandemic, which started at the end of 2019 in Wuhan, China. The isolates were obtained from nasopharyngeal swabs from Moroccan patients with COVID-19. Mutation analysis revealed the presence of the spike D614G mutation in all six genomes, which is widely present in several genomes around the world.
has issue date	2020-08-06(xsd:dateTime)
bibo:doi	10.1128/mra.00767-20
bibo:pmid	32763945
has license	cc-by
sha1sum (hex)	0a4e14adbd5b96853c0049647a687d6e289190b2
schema:url	https://doi.org/10.1128/mra.00767-20
resource representing a document's title	Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology
has PubMed Central identifier	PMC7409862
has PubMed identifier	32763945
schema:publication	Microbiol Resour Announc
resource representing a document's body	covid:0a4e14adbd5b96853c0049647a687d6e289190b2#body_text
is schema:about of	named entity 'genome' named entity 'SARS-CoV-2' named entity 'severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)' named entity 'Sequences' named entity 'STRAINS' named entity 'MOROCCAN' named entity 'ISOLATES' named entity 'PATIENTS' named entity 'OBTAINED' named entity 'REVEALED' named entity 'SPIKE' named entity 'HERE' named entity 'SEQUENCES' named entity 'COVID-19' named entity 'patients' named entity 'pandemic' named entity 'Moroccan' named entity 'draft genome' named entity 'COVID-19' named entity 'Genome Sequences' named entity 'United States' named entity 'consensus sequences' named entity 'NCBI' named entity 'genomes' named entity 'GISAID' named entity 'augur' named entity 'SAM/BAM files' named entity 'GenBank' named entity 'genomes' named entity 'GISAID' named entity 'sequenced' named entity 'genomes' named entity 'reference genome' named entity 'amino acid' named entity 'reference genome' named entity 'database' named entity 'Variant calling' named entity 'SRA' named entity 'nonsynonymous mutation' named entity 'GenBank' named entity 'database' named entity 'nucleotide substitutions' named entity 'ac.uk' named entity 'github.com' named entity 'mutation' named entity 'clades' named entity 'spike protein' named entity 'sequenced' named entity 'genome sequences' named entity 'clade' named entity 'consensus sequences' named entity 'MAFFT' named entity 'DDBJ' named entity 'consensus sequences' named entity 'intergenic' named entity 'GenBank' named entity 'maximum-likelihood' named entity 'Wuhan' named entity 'SARS-CoV-2' named entity 'SAMtools'

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